; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg26325 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26325
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-H2 finger protein ATL74-like
Genome locationCarg_Chr03:10165962..10166564
RNA-Seq ExpressionCarg26325
SyntenyCarg26325
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581508.1 hypothetical protein SDJN03_21510, partial [Cucurbita argyrosperma subsp. sororia]2.4e-10499.5Show/hide
Query:  MKEKRGGNETAFSVFSAQTKEKTATTSNHILTLHLQLLCFFISTCSIPVFMLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFN
        MKEKRGGNETAFSVFSAQTKEKTATTSNHILTLHLQLLCFFISTCSIPVFMLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFN
Subjt:  MKEKRGGNETAFSVFSAQTKEKTATTSNHILTLHLQLLCFFISTCSIPVFMLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFN

Query:  LLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMSTKAAVSLFLPHLQSSAQAPQGFCYFYTSHSVMSTKAAQINKQYT
        LLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMSTKAAVSLFLPHLQ+SAQAPQGFCYFYTSHSVMSTKAAQINKQYT
Subjt:  LLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMSTKAAVSLFLPHLQSSAQAPQGFCYFYTSHSVMSTKAAQINKQYT

KAG7034799.1 hypothetical protein SDJN02_04531, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-104100Show/hide
Query:  MKEKRGGNETAFSVFSAQTKEKTATTSNHILTLHLQLLCFFISTCSIPVFMLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFN
        MKEKRGGNETAFSVFSAQTKEKTATTSNHILTLHLQLLCFFISTCSIPVFMLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFN
Subjt:  MKEKRGGNETAFSVFSAQTKEKTATTSNHILTLHLQLLCFFISTCSIPVFMLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFN

Query:  LLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMSTKAAVSLFLPHLQSSAQAPQGFCYFYTSHSVMSTKAAQINKQYT
        LLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMSTKAAVSLFLPHLQSSAQAPQGFCYFYTSHSVMSTKAAQINKQYT
Subjt:  LLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMSTKAAVSLFLPHLQSSAQAPQGFCYFYTSHSVMSTKAAQINKQYT

XP_022146710.1 RING-H2 finger protein ATL74-like [Momordica charantia]5.8e-3475.47Show/hide
Query:  MLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMK
        +LLPSRPFQLA +LGSSY E +SS  PS NP PS+ F  PHE+E G NF+L+V VAAI CAVVCT+GLNTMLTCILQCA HTLRQT QWVALRGLNSGMK
Subjt:  MLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMK

Query:  KQDMMS
        KQDM++
Subjt:  KQDMMS

XP_022977991.1 RING-H2 finger protein ATL74-like [Cucurbita maxima]6.7e-4691.51Show/hide
Query:  MLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMK
        MLLPSRPFQLAKMLGSSY EPSSSPTPSFNPLPS+SFAYPH+QEQGSNFNL+V VAAIVCAVVCTLGLNTMLTCILQCANHTLRQT QWVALRGLN GMK
Subjt:  MLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMK

Query:  KQDMMS
        KQDM++
Subjt:  KQDMMS

XP_031743035.1 RING-H2 finger protein ATL73 [Cucumis sativus]1.9e-2954.9Show/hide
Query:  MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMM-------
        ML SS+ EP  SP+PS NP PS+S   PHE   G NFNL+V V AIVCAVVCTLGLNTML CILQCANH+LRQT QWVALRGLNSGMKKQDM+       
Subjt:  MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMM-------

Query:  ---------STKAAVSLFLPHLQSSAQAPQGFCYFYTSHSV-MSTKAAQINKQ
                 S+ +A ++ L    +  +A       Y SH V MS+K  Q+ KQ
Subjt:  ---------STKAAVSLFLPHLQSSAQAPQGFCYFYTSHSV-MSTKAAQINKQ

TrEMBL top hitse value%identityAlignment
A0A0A0KJ24 RING-type domain-containing protein1.4e-2874.47Show/hide
Query:  MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS
        ML SS+ EP  SP+PS NP PS+S   PHE   G NFNL+V V AIVCAVVCTLGLNTML CILQCANH+LRQT QWVALRGLNSGMKKQDM++
Subjt:  MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS

A0A1S3AYW1 RING-H2 finger protein ATL74-like1.2e-2774.47Show/hide
Query:  MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS
        ML SS+ EPSSS  PS NP PS+S   P E E G NFNL+V V AIVCAVVCTLGLNTML CILQCANH+LRQT QWVALRGLNSGMKKQD+++
Subjt:  MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS

A0A5A7UAN6 RING-H2 finger protein ATL74-like3.3e-2773.4Show/hide
Query:  MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS
        ML SS+ EPSSS  PS NP PS+S   P E E G NFNL+V V AIVCAVVCTLGLNTML CILQCANH+ RQT QWVALRGLNSGMKKQD+++
Subjt:  MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS

A0A6J1CY10 RING-H2 finger protein ATL74-like2.8e-3475.47Show/hide
Query:  MLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMK
        +LLPSRPFQLA +LGSSY E +SS  PS NP PS+ F  PHE+E G NF+L+V VAAI CAVVCT+GLNTMLTCILQCA HTLRQT QWVALRGLNSGMK
Subjt:  MLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMK

Query:  KQDMMS
        KQDM++
Subjt:  KQDMMS

A0A6J1ILJ0 RING-H2 finger protein ATL74-like3.2e-4691.51Show/hide
Query:  MLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMK
        MLLPSRPFQLAKMLGSSY EPSSSPTPSFNPLPS+SFAYPH+QEQGSNFNL+V VAAIVCAVVCTLGLNTMLTCILQCANHTLRQT QWVALRGLN GMK
Subjt:  MLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMK

Query:  KQDMMS
        KQDM++
Subjt:  KQDMMS

SwissProt top hitse value%identityAlignment
Q6NQG7 RING-H2 finger protein ATL781.0e-0428.79Show/hide
Query:  STCSIPVFMLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQT-FQWVA
        +T SI +  + P+  FQ  ++LGSSY+      T   +P P+ S   P+  +   + N+++ ++ ++CA+VC+LGLN+++ C L+C+N    +       
Subjt:  STCSIPVFMLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQT-FQWVA

Query:  LRGLNSGMKKQDMMSTKA---AVSLFLPHLQS
        +R  N+G+K++ + S +    +  L LP L +
Subjt:  LRGLNSGMKKQDMMSTKA---AVSLFLPHLQS

Arabidopsis top hitse value%identityAlignment
AT1G49230.1 RING/U-box superfamily protein7.2e-0628.79Show/hide
Query:  STCSIPVFMLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQT-FQWVA
        +T SI +  + P+  FQ  ++LGSSY+      T   +P P+ S   P+  +   + N+++ ++ ++CA+VC+LGLN+++ C L+C+N    +       
Subjt:  STCSIPVFMLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQT-FQWVA

Query:  LRGLNSGMKKQDMMSTKA---AVSLFLPHLQS
        +R  N+G+K++ + S +    +  L LP L +
Subjt:  LRGLNSGMKKQDMMSTKA---AVSLFLPHLQS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAAAAGCGAGGGGGCAATGAGACTGCCTTTTCTGTTTTCAGCGCACAAACAAAAGAAAAAACAGCCACTACTTCAAATCACATTCTCACCCTCCATCTTCAACT
CTTATGTTTCTTCATCTCAACTTGTTCCATACCTGTGTTTATGCTGCTTCCTTCTCGGCCATTTCAGCTTGCAAAAATGCTCGGTTCTTCGTACACCGAGCCTTCCTCCT
CTCCGACTCCTTCCTTTAATCCCTTGCCGAGCTTATCTTTCGCGTACCCTCACGAGCAAGAACAAGGCAGCAACTTCAACCTCCTTGTCACTGTGGCTGCAATTGTTTGC
GCCGTTGTTTGCACACTTGGTTTAAATACCATGCTGACATGCATACTTCAATGCGCCAATCACACCCTCAGACAGACATTCCAATGGGTGGCTTTAAGAGGACTGAACTC
GGGCATGAAGAAGCAAGACATGATGTCAACTAAAGCTGCTGTCTCACTCTTCTTGCCCCACCTGCAGTCATCAGCTCAAGCCCCCCAAGGATTCTGCTACTTCTATACAT
CACATAGTGTAATGTCAACTAAAGCTGCACAGATCAATAAGCAGTACACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAAAAGCGAGGGGGCAATGAGACTGCCTTTTCTGTTTTCAGCGCACAAACAAAAGAAAAAACAGCCACTACTTCAAATCACATTCTCACCCTCCATCTTCAACT
CTTATGTTTCTTCATCTCAACTTGTTCCATACCTGTGTTTATGCTGCTTCCTTCTCGGCCATTTCAGCTTGCAAAAATGCTCGGTTCTTCGTACACCGAGCCTTCCTCCT
CTCCGACTCCTTCCTTTAATCCCTTGCCGAGCTTATCTTTCGCGTACCCTCACGAGCAAGAACAAGGCAGCAACTTCAACCTCCTTGTCACTGTGGCTGCAATTGTTTGC
GCCGTTGTTTGCACACTTGGTTTAAATACCATGCTGACATGCATACTTCAATGCGCCAATCACACCCTCAGACAGACATTCCAATGGGTGGCTTTAAGAGGACTGAACTC
GGGCATGAAGAAGCAAGACATGATGTCAACTAAAGCTGCTGTCTCACTCTTCTTGCCCCACCTGCAGTCATCAGCTCAAGCCCCCCAAGGATTCTGCTACTTCTATACAT
CACATAGTGTAATGTCAACTAAAGCTGCACAGATCAATAAGCAGTACACTTAA
Protein sequenceShow/hide protein sequence
MKEKRGGNETAFSVFSAQTKEKTATTSNHILTLHLQLLCFFISTCSIPVFMLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVC
AVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMSTKAAVSLFLPHLQSSAQAPQGFCYFYTSHSVMSTKAAQINKQYT