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Carg26346 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26346
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-CH-type domain-containing protein
Genome locationCarg_Chr15:5458469..5459420
RNA-Seq ExpressionCarg26346
SyntenyCarg26346
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR022143 - Protein of unknown function DUF3675
IPR033275 - E3 ubiquitin-protein ligase MARCH-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579246.1 putative E3 ubiquitin ligase SUD1, partial [Cucurbita argyrosperma subsp. sororia]3.2e-5499.2Show/hide
Query:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS
        MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESD YSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS
Subjt:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS

Query:  TSIVRSSTSVSSQPQPYIIRVRSVS
        TSIVRSSTSVSSQPQPYIIRVRSVS
Subjt:  TSIVRSSTSVSSQPQPYIIRVRSVS

KAG7016761.1 hypothetical protein SDJN02_21871, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-55100Show/hide
Query:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS
        MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS
Subjt:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS

Query:  TSIVRSSTSVSSQPQPYIIRVRSVS
        TSIVRSSTSVSSQPQPYIIRVRSVS
Subjt:  TSIVRSSTSVSSQPQPYIIRVRSVS

XP_023522106.1 uncharacterized protein LOC111785983 isoform X1 [Cucurbita pepo subsp. pepo]7.3e-5195.28Show/hide
Query:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLL--LATSSSSSI
        MVSSNRNVVDTDYDEFS SAATSVLCCHSFAIVFMVLLVLRHSLPLIFNE+  YSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLL  LATSSSSSI
Subjt:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLL--LATSSSSSI

Query:  HSTSIVRSSTSVSSQPQPYIIRVRSVS
        HSTSIVRSSTSVSSQPQPYIIRVRSVS
Subjt:  HSTSIVRSSTSVSSQPQPYIIRVRSVS

XP_023522107.1 uncharacterized protein LOC111785983 isoform X2 [Cucurbita pepo subsp. pepo]2.3e-5296.8Show/hide
Query:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS
        MVSSNRNVVDTDYDEFS SAATSVLCCHSFAIVFMVLLVLRHSLPLIFNE+  YSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS
Subjt:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS

Query:  TSIVRSSTSVSSQPQPYIIRVRSVS
        TSIVRSSTSVSSQPQPYIIRVRSVS
Subjt:  TSIVRSSTSVSSQPQPYIIRVRSVS

XP_023551194.1 uncharacterized protein LOC111809081 [Cucurbita pepo subsp. pepo]7.3e-5195.28Show/hide
Query:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLL--LATSSSSSI
        MVSSNRNVVDTDYDEFS SAATSVLCCHSFAIVFMVLLVLRHSLPLIFNE+  YSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLL  LATSSSSSI
Subjt:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLL--LATSSSSSI

Query:  HSTSIVRSSTSVSSQPQPYIIRVRSVS
        HSTSIVRSSTSVSSQPQPYIIRVRSVS
Subjt:  HSTSIVRSSTSVSSQPQPYIIRVRSVS

TrEMBL top hitse value%identityAlignment
A0A1S3CST5 uncharacterized protein LOC103504564 isoform X23.9e-4283.61Show/hide
Query:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS
        MVSSNRNV D  YDEFSASAATSVLCCHS AI+FMVLLVLRHSLPLIFNES  YSFPLLL+ICLR+  IFLP+YVMFKVV AVHRRRLLLATS SS I S
Subjt:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS

Query:  TSIVRSSTSVSSQPQPYIIRVR
        +SI RSSTS S QPQPYIIRVR
Subjt:  TSIVRSSTSVSSQPQPYIIRVR

A0A1S4DSC9 uncharacterized protein LOC103504564 isoform X33.9e-4283.61Show/hide
Query:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS
        MVSSNRNV D  YDEFSASAATSVLCCHS AI+FMVLLVLRHSLPLIFNES  YSFPLLL+ICLR+  IFLP+YVMFKVV AVHRRRLLLATS SS I S
Subjt:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS

Query:  TSIVRSSTSVSSQPQPYIIRVR
        +SI RSSTS S QPQPYIIRVR
Subjt:  TSIVRSSTSVSSQPQPYIIRVR

A0A5A7TTY1 DUF3675 domain-containing protein/RINGv domain-containing protein3.9e-4283.61Show/hide
Query:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS
        MVSSNRNV D  YDEFSASAATSVLCCHS AI+FMVLLVLRHSLPLIFNES  YSFPLLL+ICLR+  IFLP+YVMFKVV AVHRRRLLLATS SS I S
Subjt:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS

Query:  TSIVRSSTSVSSQPQPYIIRVR
        +SI RSSTS S QPQPYIIRVR
Subjt:  TSIVRSSTSVSSQPQPYIIRVR

A0A6J1K1N8 uncharacterized protein LOC111489819 isoform X19.7e-4993.65Show/hide
Query:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS
        MVSSNRNVVDT+YDEFSASAATSVLC HSFAIVFMVLLVLRH+LPLIFNES  YSFPLLLSICLRSLLI LPIYVM KVVSAVHRRRLLLATSSSSSIHS
Subjt:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS

Query:  T-SIVRSSTSVSSQPQPYIIRVRSVS
        T SIVRSSTSVSSQPQPYIIRVRSVS
Subjt:  T-SIVRSSTSVSSQPQPYIIRVRSVS

A0A6J1K1P4 uncharacterized protein LOC111489819 isoform X29.7e-4993.65Show/hide
Query:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS
        MVSSNRNVVDT+YDEFSASAATSVLC HSFAIVFMVLLVLRH+LPLIFNES  YSFPLLLSICLRSLLI LPIYVM KVVSAVHRRRLLLATSSSSSIHS
Subjt:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS

Query:  T-SIVRSSTSVSSQPQPYIIRVRSVS
        T SIVRSSTSVSSQPQPYIIRVRSVS
Subjt:  T-SIVRSSTSVSSQPQPYIIRVRSVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01275.1 RING/FYVE/PHD zinc finger superfamily protein1.8e-1038.52Show/hide
Query:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS
        +V ++   +D  Y     S+ TS +CC S  ++FM LL+LRH+LPL+   S+ + FPL   + LR L I LPIYV+ K V+   R    L TS S     
Subjt:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS

Query:  TSIVRSSTSVSSQPQPYIIRVR
        +S   + +    Q Q YII VR
Subjt:  TSIVRSSTSVSSQPQPYIIRVR

AT2G01275.2 RING/FYVE/PHD zinc finger superfamily protein1.8e-1038.52Show/hide
Query:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS
        +V ++   +D  Y     S+ TS +CC S  ++FM LL+LRH+LPL+   S+ + FPL   + LR L I LPIYV+ K V+   R    L TS S     
Subjt:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHS

Query:  TSIVRSSTSVSSQPQPYIIRVR
        +S   + +    Q Q YII VR
Subjt:  TSIVRSSTSVSSQPQPYIIRVR

AT3G47550.3 RING/FYVE/PHD zinc finger superfamily protein3.2e-0430.47Show/hide
Query:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSI-CLRSLLIFLPIYVMFKVVSAVHRRR------LLLATS
        M ++ R+ ++ DYDE+S + ++    C S A++ M LL+LR +L L  N  D        S+  LR+    LP Y+M   +  + RRR       L A  
Subjt:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSI-CLRSLLIFLPIYVMFKVVSAVHRRR------LLLATS

Query:  SSSSIHSTSIVRSSTSVSSQPQPYIIRV
         +  IH     R     +  PQP I  V
Subjt:  SSSSIHSTSIVRSSTSVSSQPQPYIIRV

AT5G38070.1 RING/FYVE/PHD zinc finger superfamily protein6.9e-0735.14Show/hide
Query:  DTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLAT--SSSSSIHSTSIVRSS
        D D+D +S  + TS++CC   A++F++LL LRHSLP++    D +S  LL+   +R+L I L  YV FK    + R R    T  S  SS   T+  R  
Subjt:  DTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLAT--SSSSSIHSTSIVRSS

Query:  TSVSSQPQPYI
         ++  +P+ ++
Subjt:  TSVSSQPQPYI

AT5G62460.1 RING/FYVE/PHD zinc finger superfamily protein2.6e-0635.56Show/hide
Query:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYS---FPLLLSICLRSLLIFLPIYVMFKVVSAVHRRR
        M ++ R+  D DYDE++ S ++    C S A++ M LL+LRH+L L  N SD              LR+    LP Y+M   +S + RRR
Subjt:  MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYS---FPLLLSICLRSLLIFLPIYVMFKVVSAVHRRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTTCAAACCGTAATGTTGTTGATACCGACTATGATGAGTTCTCAGCTTCTGCTGCAACCAGCGTGCTATGCTGCCATTCGTTTGCTATTGTTTTCATGGTTCT
TCTGGTTTTGAGGCACTCTCTTCCCCTCATATTCAATGAAAGCGATTGTTACTCTTTCCCTCTGCTTCTGTCGATTTGCCTGCGAAGTTTACTGATCTTTCTACCAATAT
ACGTTATGTTCAAAGTAGTCTCTGCAGTTCATCGCCGTCGACTTCTCCTGGCTACATCTTCTAGTTCATCCATTCATTCAACCAGCATAGTTAGGAGTTCGACATCCGTA
TCGTCCCAACCTCAGCCTTACATTATCCGCGTTCGGTCAGTTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCTTCAAACCGTAATGTTGTTGATACCGACTATGATGAGTTCTCAGCTTCTGCTGCAACCAGCGTGCTATGCTGCCATTCGTTTGCTATTGTTTTCATGGTTCT
TCTGGTTTTGAGGCACTCTCTTCCCCTCATATTCAATGAAAGCGATTGTTACTCTTTCCCTCTGCTTCTGTCGATTTGCCTGCGAAGTTTACTGATCTTTCTACCAATAT
ACGTTATGTTCAAAGTAGTCTCTGCAGTTCATCGCCGTCGACTTCTCCTGGCTACATCTTCTAGTTCATCCATTCATTCAACCAGCATAGTTAGGAGTTCGACATCCGTA
TCGTCCCAACCTCAGCCTTACATTATCCGCGTTCGGTCAGTTTCATAGCAGCAGAAGGTCCGAGACATTGGATTGCGAGCTGAAGAATGGTGTTGGTACGGGGGGGATAC
ATGGCAGTAGCCTTTGCTTTGTGTATAGATGGGTATAGATGTTTGAAGTTGTTATGCAGTTTAGTTTATTAAATGATTGGTTTGTGTTAGAAATTCTTTGTACAGAAAAG
AAATGAATGAATGATATATGCACATAATATATAAATCTCTTACTGTTCGAACTTCTAACGTCTTAGTTAATAGATAAATAAATTTATC
Protein sequenceShow/hide protein sequence
MVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESDCYSFPLLLSICLRSLLIFLPIYVMFKVVSAVHRRRLLLATSSSSSIHSTSIVRSSTSV
SSQPQPYIIRVRSVS