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Carg26347 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26347
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING/FYVE/PHD zinc finger superfamily protein
Genome locationCarg_Chr15:5456797..5458452
RNA-Seq ExpressionCarg26347
SyntenyCarg26347
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR011016 - Zinc finger, RING-CH-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR033275 - E3 ubiquitin-protein ligase MARCH-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579246.1 putative E3 ubiquitin ligase SUD1, partial [Cucurbita argyrosperma subsp. sororia]2.5e-8488.27Show/hide
Query:  MPQSLEYIHPCVTPTHFTFFPKSSANFLQKHRRGKQG-----------SPAFFASTRFHPLLIVKYLFPDMGDHFVLLVDRLLTETTLEAAIESRKRLTE
        MPQSLEYIHPCVTPTHFTFFPKSSANFLQKHRRGK G           SP FF       L IVKYLFPDMGDHFVLLVDRLLTETTLEAAIESRKRLTE
Subjt:  MPQSLEYIHPCVTPTHFTFFPKSSANFLQKHRRGKQG-----------SPAFFASTRFHPLLIVKYLFPDMGDHFVLLVDRLLTETTLEAAIESRKRLTE

Query:  ATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICHQ
        ATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICHQ
Subjt:  ATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICHQ

KAG7016760.1 putative E3 ubiquitin ligase SUD1, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-102100Show/hide
Query:  MPQSLEYIHPCVTPTHFTFFPKSSANFLQKHRRGKQGSPAFFASTRFHPLLIVKYLFPDMGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKG
        MPQSLEYIHPCVTPTHFTFFPKSSANFLQKHRRGKQGSPAFFASTRFHPLLIVKYLFPDMGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKG
Subjt:  MPQSLEYIHPCVTPTHFTFFPKSSANFLQKHRRGKQGSPAFFASTRFHPLLIVKYLFPDMGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKG

Query:  DSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICHQGELGDFSKELG
        DSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICHQGELGDFSKELG
Subjt:  DSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICHQGELGDFSKELG

XP_008467135.1 PREDICTED: uncharacterized protein LOC103504564 isoform X1 [Cucumis melo]4.8e-6482.69Show/hide
Query:  TH-FTFFPKSSANFLQKHRRG-KQGSPAFFASTRFHPLLIVKYLFPDMGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNI
        TH F  FPK+ ANFLQKHRRG K G P FFASTRFHPL     LF  MGDHFVLLVDRLLTE+TLEAAIESRK  TEATSSAMDGLK D S P+M F+NI
Subjt:  TH-FTFFPKSSANFLQKHRRG-KQGSPAFFASTRFHPLLIVKYLFPDMGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNI

Query:  PFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICHQ
        P PKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEIC Q
Subjt:  PFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICHQ

XP_022993989.1 uncharacterized protein LOC111489819 isoform X1 [Cucurbita maxima]3.1e-5090.83Show/hide
Query:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG
        MGDHFVLLVDRLLTETTLEAAIES+K        AMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG
Subjt:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG

Query:  DTICEICHQ
        DTICEIC Q
Subjt:  DTICEICHQ

XP_023522108.1 E3 ubiquitin-protein ligase MARCH8-like [Cucurbita pepo subsp. pepo]3.7e-5698.17Show/hide
Query:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG
        MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEF+NIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG
Subjt:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG

Query:  DTICEICHQ
        DTICEIC Q
Subjt:  DTICEICHQ

TrEMBL top hitse value%identityAlignment
A0A1S3CST5 uncharacterized protein LOC103504564 isoform X29.6e-5089.91Show/hide
Query:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG
        MGDHFVLLVDRLLTE+TLEAAIESRK  TEATSSAMDGLK D S P+M F+NIP PKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG
Subjt:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG

Query:  DTICEICHQ
        DTICEIC Q
Subjt:  DTICEICHQ

A0A1S3CST7 uncharacterized protein LOC103504564 isoform X12.3e-6482.69Show/hide
Query:  TH-FTFFPKSSANFLQKHRRG-KQGSPAFFASTRFHPLLIVKYLFPDMGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNI
        TH F  FPK+ ANFLQKHRRG K G P FFASTRFHPL     LF  MGDHFVLLVDRLLTE+TLEAAIESRK  TEATSSAMDGLK D S P+M F+NI
Subjt:  TH-FTFFPKSSANFLQKHRRG-KQGSPAFFASTRFHPLLIVKYLFPDMGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNI

Query:  PFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICHQ
        P PKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEIC Q
Subjt:  PFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICHQ

A0A5A7TTY1 DUF3675 domain-containing protein/RINGv domain-containing protein9.6e-5089.91Show/hide
Query:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG
        MGDHFVLLVDRLLTE+TLEAAIESRK  TEATSSAMDGLK D S P+M F+NIP PKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG
Subjt:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG

Query:  DTICEICHQ
        DTICEIC Q
Subjt:  DTICEICHQ

A0A6J1DFQ6 uncharacterized protein LOC111020033 isoform X11.3e-4988.99Show/hide
Query:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG
        MGDHFVLLVDRLLTE+ LEAAIESRKR TEATSSAMD L+ D S PEMEF+NIP PKK+VECRICQDEDEDSNMETPCSCCGSLKYAHR CIQKWCNEKG
Subjt:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG

Query:  DTICEICHQ
        DTICEICHQ
Subjt:  DTICEICHQ

A0A6J1K1N8 uncharacterized protein LOC111489819 isoform X11.5e-5090.83Show/hide
Query:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG
        MGDHFVLLVDRLLTETTLEAAIES+K        AMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG
Subjt:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG

Query:  DTICEICHQ
        DTICEIC Q
Subjt:  DTICEICHQ

SwissProt top hitse value%identityAlignment
A6NNE9 E3 ubiquitin-protein ligase MARCHF111.6e-0641.3Show/hide
Query:  CRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEIC
        C+IC    E   +  PC C GS++Y H+ C+ KW +E+G   CE+C
Subjt:  CRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEIC

Q5I0I2 E3 ubiquitin-protein ligase MARCHF29.7e-0738.3Show/hide
Query:  CRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICH
        CRIC +     N+ +PC C G+L   H+ C++KW +    + CE+CH
Subjt:  CRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICH

Q8CBH7 E3 ubiquitin-protein ligase MARCHF111.6e-0641.3Show/hide
Query:  CRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEIC
        C+IC    E   +  PC C GS++Y H+ C+ KW +E+G   CE+C
Subjt:  CRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEIC

Q99M02 E3 ubiquitin-protein ligase MARCHF29.7e-0738.3Show/hide
Query:  CRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICH
        CRIC +     N+ +PC C G+L   H+ C++KW +    + CE+CH
Subjt:  CRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICH

Q9P2E8 E3 ubiquitin-protein ligase MARCHF47.4e-0731.4Show/hide
Query:  TEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVE------CRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICH
        TE  +S +     D  C E   D       +        CRIC    E   + +PC C GS+K  H+ C+ KW +E+G   CE+C+
Subjt:  TEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVE------CRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICH

Arabidopsis top hitse value%identityAlignment
AT2G01275.1 RING/FYVE/PHD zinc finger superfamily protein1.6e-3358.62Show/hide
Query:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG
        MGDHFVLLVDRL+TE+T+EAAI+SR ++ +A     +    D    EM  +       + ECRIC DED DSNMETPCSC GS+KYAHRRC+Q+WCNEKG
Subjt:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG

Query:  DTICEICHQGELGDFS
        DT CEICHQ    D++
Subjt:  DTICEICHQGELGDFS

AT2G01275.2 RING/FYVE/PHD zinc finger superfamily protein1.6e-3358.62Show/hide
Query:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG
        MGDHFVLLVDRL+TE+T+EAAI+SR ++ +A     +    D    EM  +       + ECRIC DED DSNMETPCSC GS+KYAHRRC+Q+WCNEKG
Subjt:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG

Query:  DTICEICHQGELGDFS
        DT CEICHQ    D++
Subjt:  DTICEICHQGELGDFS

AT3G47550.2 RING/FYVE/PHD zinc finger superfamily protein7.5e-2344.44Show/hide
Query:  MGDHFVLLVDRLLTETTLEAAIES--------RKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCI
        M DH  L  DRL+T  +L++  +S        R + T+  SS+++  +       +  +  P  +  VECRICQ+ED   N+E PC+C GSLKYAHR+C+
Subjt:  MGDHFVLLVDRLLTETTLEAAIES--------RKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCI

Query:  QKWCNEKGDTICEICHQ
        Q+WCNEKGD  CEICHQ
Subjt:  QKWCNEKGDTICEICHQ

AT3G47550.3 RING/FYVE/PHD zinc finger superfamily protein7.5e-2344.44Show/hide
Query:  MGDHFVLLVDRLLTETTLEAAIES--------RKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCI
        M DH  L  DRL+T  +L++  +S        R + T+  SS+++  +       +  +  P  +  VECRICQ+ED   N+E PC+C GSLKYAHR+C+
Subjt:  MGDHFVLLVDRLLTETTLEAAIES--------RKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCI

Query:  QKWCNEKGDTICEICHQ
        Q+WCNEKGD  CEICHQ
Subjt:  QKWCNEKGDTICEICHQ

AT5G38070.1 RING/FYVE/PHD zinc finger superfamily protein1.8e-2449.54Show/hide
Query:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG
        MGDH VL+VDRL +++ L       +   +A S   DG+    S      ++     K V+CRIC DEDED+NM+TPCSC G+LK+AH  C+Q+WCNEKG
Subjt:  MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKG

Query:  DTICEICHQ
        DT+CEIC Q
Subjt:  DTICEICHQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACAAAGCTTGGAATACATTCATCCATGTGTCACACCCACCCATTTTACCTTCTTCCCGAAATCTTCGGCTAATTTCCTTCAGAAACATCGGAGGGGAAAACAGGG
GTCACCAGCTTTCTTTGCTTCAACAAGATTCCATCCCCTCCTTATTGTAAAATATCTTTTTCCTGATATGGGGGATCACTTTGTTTTGCTGGTTGATCGATTGTTGACGG
AGACGACATTAGAAGCAGCGATTGAGAGCCGAAAGCGATTGACTGAAGCAACGTCCTCTGCCATGGATGGTTTGAAGGGGGACAGTTCTTGCCCAGAAATGGAGTTTGAC
AATATACCATTTCCAAAGAAAATTGTGGAATGTAGAATATGCCAGGATGAAGATGAAGACTCGAACATGGAAACACCTTGCTCGTGCTGTGGCAGCCTTAAGTATGCACA
TCGAAGATGCATACAGAAGTGGTGTAACGAAAAGGGTGATACAATTTGTGAGATATGCCACCAGGGGGAACTGGGAGATTTCTCGAAGGAACTTGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCACAAAGCTTGGAATACATTCATCCATGTGTCACACCCACCCATTTTACCTTCTTCCCGAAATCTTCGGCTAATTTCCTTCAGAAACATCGGAGGGGAAAACAGGG
GTCACCAGCTTTCTTTGCTTCAACAAGATTCCATCCCCTCCTTATTGTAAAATATCTTTTTCCTGATATGGGGGATCACTTTGTTTTGCTGGTTGATCGATTGTTGACGG
AGACGACATTAGAAGCAGCGATTGAGAGCCGAAAGCGATTGACTGAAGCAACGTCCTCTGCCATGGATGGTTTGAAGGGGGACAGTTCTTGCCCAGAAATGGAGTTTGAC
AATATACCATTTCCAAAGAAAATTGTGGAATGTAGAATATGCCAGGATGAAGATGAAGACTCGAACATGGAAACACCTTGCTCGTGCTGTGGCAGCCTTAAGTATGCACA
TCGAAGATGCATACAGAAGTGGTGTAACGAAAAGGGTGATACAATTTGTGAGATATGCCACCAGGGGGAACTGGGAGATTTCTCGAAGGAACTTGGATAG
Protein sequenceShow/hide protein sequence
MPQSLEYIHPCVTPTHFTFFPKSSANFLQKHRRGKQGSPAFFASTRFHPLLIVKYLFPDMGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMEFD
NIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICHQGELGDFSKELG