CuGenDBv2

Gene ID	Carg26351
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	EAF domain-containing protein
Genome location	Carg_Chr15:5431721..5434806
RNA-Seq Expression	Carg26351
Synteny	Carg26351
Gene Ontology terms	GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0032783 - ELL-EAF complex (cellular component) GO:0003711 - transcription elongation regulator activity (molecular function)
InterPro domains	IPR019194 - Transcription elongation factor Eaf, N-terminal IPR027093 - EAF family

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6579241.1 Ell-associated factor Eaf, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-177

99.42

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Query:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD
        RLERLHRAVKQLRHLRQPGESSAAAVA ASSTSASA+HSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD
Subjt:  RLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD

Query:  PPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRA
        PPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRA
Subjt:  PPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRA

Query:  QVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI
        QVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI
Subjt:  QVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI

XP_008454810.1 PREDICTED: ELL-associated factor 2 [Cucumis melo]

5.4e-136

77.93

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Query:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANN  EEPKTAPQPDRWY+LSLGPSF +ESSNKFCT RYEFKPASIDKTKPG LKKTKENRVT+EFQN+Q GKPN++F+GSSEDYK+NDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESSAAAVAAASST-------------SASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKP
        RLERLHRAV QLRHLRQPGES+AAA  A ++T             SAS LHSLTPPEPRLSPP  KV KPMHMGR SFP++ VEVE+IDIGEPGN GAKP
Subjt:  RLERLHRAVKQLRHLRQPGESSAAAVAAASST-------------SASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKP

Query:  VVASKGPADYSSDPPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE
        VVASKG  DYSSDPPN S  SPG KNDDEHQDIDIDDIFGSVSSDD NNAEE++V+ GFDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE
Subjt:  VVASKGPADYSSDPPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE

Query:  GREGPTAAAALRAQVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI
        GR                   EQSSSSSSS SGSGSSSGSSS SSDSEG+DEDSVTSI
Subjt:  GREGPTAAAALRAQVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI

XP_022939831.1 ELL-associated factor 1 [Cucurbita moschata]

4.3e-178

100

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Query:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD
        RLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD
Subjt:  RLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD

Query:  PPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRA
        PPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRA
Subjt:  PPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRA

Query:  QVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI
        QVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI
Subjt:  QVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI

XP_022993461.1 ELL-associated factor 1 [Cucurbita maxima]

1.1e-176

99.42

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Query:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD
        RLERLHRAVKQLRHLRQPGESSAA VAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAK VVASKGPADYSSD
Subjt:  RLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD

Query:  PPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRA
        PPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRA
Subjt:  PPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRA

Query:  QVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI
        QVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI
Subjt:  QVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI

XP_038893321.1 ELL-associated factor 2-like [Benincasa hispida]

4.7e-156

86.87

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Query:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANNNKEEPKTAPQPDRWY+LSLGPSF +ESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVT+EFQNNQ GKPNVAFVGSSEDYKENDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESSAAAVAAASSTS-------------ASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKP
        RLERLHRAVKQLRHLRQPGES+AAA AA  +T+             ASALHSLTPPEPRLSPP AKV KPMHMGRGSFP++ VEVE+IDIGEPGNTGAK 
Subjt:  RLERLHRAVKQLRHLRQPGESSAAAVAAASSTS-------------ASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKP

Query:  VVASKGPADYSSDPPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE
        VVASKG ADYSSDPPNVSA SPG KNDDEHQDIDIDD+FGSV SDD NNAEE++V+ GFDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE
Subjt:  VVASKGPADYSSDPPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE

Query:  GREGPTAAAALRAQVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI
        GREGPTAAAALRAQV+AEGRD+QSSSSSSS SGSGSSSGSSSGSSDSEG+DEDSVTSI
Subjt:  GREGPTAAAALRAQVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KM56 EAF domain-containing protein

1.6e-133

78.31

Show/hide

Query:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANN  EEPKTAPQPDRWY+LSLGPSF +ESSNKFCT RYEFKPASIDKTKPG LKKTKENRVT+EFQN+Q GKPN++FVGSSEDYKENDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESSAAAVA----------AASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVA
        RLERLHRAV QLRHLRQPGES+AA  A          AA+ T+AS LHSLTPPEPRLSPP  KV KPMHMGR SFP++ VEVE+IDIGEPGN GAK  VA
Subjt:  RLERLHRAVKQLRHLRQPGESSAAAVA----------AASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVA

Query:  SKGPADYSSDPPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRE
        SKG  +YSSDPPNVS  SPG KNDDEHQDIDIDDIFGSVSSDD NNAEE++V+ GFDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGR 
Subjt:  SKGPADYSSDPPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGRE

Query:  GPTAAAALRAQVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI
                          EQSSSSSSS SGSGSSSGSSS SSDSE +DEDSVTSI
Subjt:  GPTAAAALRAQVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI

A0A1S3C0N3 ELL-associated factor 2

2.6e-136

77.93

Show/hide

Query:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANN  EEPKTAPQPDRWY+LSLGPSF +ESSNKFCT RYEFKPASIDKTKPG LKKTKENRVT+EFQN+Q GKPN++F+GSSEDYK+NDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESSAAAVAAASST-------------SASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKP
        RLERLHRAV QLRHLRQPGES+AAA  A ++T             SAS LHSLTPPEPRLSPP  KV KPMHMGR SFP++ VEVE+IDIGEPGN GAKP
Subjt:  RLERLHRAVKQLRHLRQPGESSAAAVAAASST-------------SASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKP

Query:  VVASKGPADYSSDPPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE
        VVASKG  DYSSDPPN S  SPG KNDDEHQDIDIDDIFGSVSSDD NNAEE++V+ GFDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE
Subjt:  VVASKGPADYSSDPPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE

Query:  GREGPTAAAALRAQVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI
        GR                   EQSSSSSSS SGSGSSSGSSS SSDSEG+DEDSVTSI
Subjt:  GREGPTAAAALRAQVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI

A0A6J1DE82 ELL-associated factor 1

1.9e-131

78.67

Show/hide

Query:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF
        MAN+NKEEPKTAPQ +RWY+LSLGPSF +ESSNKFCTLRYEFKPASIDKTKPGSLKKTK+NRVT+EFQNNQLG+PNVAFVGSSED KENDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD
        RLERLHRAV  LRH+RQ  ES      A +S + S  HSLT PEPRLSPP AKV KPMHMGR SFP V VEVE+IDIGEPGNTGA  V ASK  ADY+SD
Subjt:  RLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD

Query:  PPNVSAPSPGP--KNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAAL
        PPNVSAPSP P   NDDEHQDIDID+IFGSVSSDD NN EE+K+D GFDINVPHHNDTDDEIADVDDSGDEA+KGPNAAE                  AL
Subjt:  PPNVSAPSPGP--KNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAAL

Query:  RAQVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI
        RAQVNAEGRD+Q+SSSSSSESGSGSSSGSSSGSSDSE +DEDSVTSI
Subjt:  RAQVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI

A0A6J1FGX9 ELL-associated factor 1

2.1e-178

100

Show/hide

Query:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD
        RLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD
Subjt:  RLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD

Query:  PPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRA
        PPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRA
Subjt:  PPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRA

Query:  QVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI
        QVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI
Subjt:  QVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI

A0A6J1JWD6 ELL-associated factor 1

5.2e-177

99.42

Show/hide

Query:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD
        RLERLHRAVKQLRHLRQPGESSAA VAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAK VVASKGPADYSSD
Subjt:  RLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD

Query:  PPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRA
        PPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRA
Subjt:  PPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRA

Query:  QVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI
        QVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI
Subjt:  QVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGTDEDSVTSI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G71080.1 RNA polymerase II transcription elongation factor

1.5e-67

51.42

Show/hide

Query:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF
        M+N++++EP TAP+ D+WYDL LG S  ++SS+KFCTLRYEFKPASIDK + GS+ K K+NRV++EFQNNQ GKP V F GSSEDYKE+DAVLFFDGE F
Subjt:  MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD
        RLERLHRAV QLRH+R PGES+AA+             S  P E RLS P  +  K   + R   P V VEVE+I+IG+P N+ A+P           ++
Subjt:  RLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSD

Query:  PPNVSAPSP-GPKND--DEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHH--NDTDDEIADV-DDSGDEAEKGPNAAEALRAQVNAEGREGPTA
          NV A SP   KND  DEHQ+ID+ +IFGS + +++ NAE++  D G  +   +   + T++EIADV DDSG E EKG NAAEALRAQVNAE ++  T+
Subjt:  PPNVSAPSP-GPKND--DEHQDIDIDDIFGSVSSDDENNAEEDKVDAGFDINVPHH--NDTDDEIADV-DDSGDEAEKGPNAAEALRAQVNAEGREGPTA

Query:  AAALRAQVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGT-DEDSVTSI
        +++  +  ++    +  S S SS SGSG  S S S S  S G+ DED V S+
Subjt:  AAALRAQVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEGT-DEDSVTSI

AT5G38050.1 RNA polymerase II transcription elongation factor

7.2e-46

42.69

Show/hide

Query:  NNNKEEPKTAPQPDRWYDLSLGPSF---NNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDY--KENDAVLFFDG
        +N+ EEPK AP+P+RWY+++LGP+    N+  S KFCTLRYEFKPASID TKPG L K+K+N+VT+EFQNNQL KP V F G SEDY  ++ DA+LFFDG
Subjt:  NNNKEEPKTAPQPDRWYDLSLGPSF---NNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDY--KENDAVLFFDG

Query:  ETFRLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADY
        E FRLE+LHR+VK+L+ LR P ES++A         +  +  + PP          V KP+ M              IDI  P                 
Subjt:  ETFRLERLHRAVKQLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADY

Query:  SSDPPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAG--FDINVPHHND-TDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTA
                         D  +D++I+D      +++E  + ++    G   DIN+PH  +  DDEIA VD + DE+ KG NAAEALRAQVNAE RE    
Subjt:  SSDPPNVSAPSPGPKNDDEHQDIDIDDIFGSVSSDDENNAEEDKVDAG--FDINVPHHND-TDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTA

Query:  AAALRAQVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEG
          + ++  +  GR+ +SS S    SGSGSSS S S  S SEG
Subjt:  AAALRAQVNAEGRDEQSSSSSSSESGSGSSSGSSSGSSDSEG

Sequences

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CDS sequence

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ATGGCGAACAACAACAAAGAAGAGCCGAAGACGGCGCCCCAGCCCGATCGATGGTATGATCTGTCTCTAGGTCCTTCATTCAACAACGAATCCTCCAACAAATTTTGCAC
TCTACGATATGAATTTAAACCCGCGTCGATCGATAAAACGAAACCGGGATCGCTGAAGAAGACTAAGGAAAATAGGGTTACTATTGAATTTCAGAACAATCAATTGGGGA
AACCTAATGTGGCGTTTGTTGGTAGTAGTGAGGATTACAAGGAGAATGATGCCGTTTTGTTTTTTGACGGCGAGACATTCCGGTTGGAGCGGCTGCACCGGGCGGTCAAG
CAGCTTCGGCACCTTCGTCAGCCGGGCGAATCTTCTGCCGCTGCCGTGGCCGCCGCCTCGTCCACCTCCGCTTCTGCCCTTCATTCTTTGACGCCGCCGGAGCCTCGGCT
ATCTCCTCCAGCGGCTAAAGTTCCCAAACCTATGCATATGGGCCGAGGCAGCTTTCCGTCGGTGCTAGTAGAGGTGGAGAAGATAGATATTGGAGAGCCAGGAAATACAG
GTGCAAAACCTGTTGTTGCTAGTAAAGGGCCTGCTGATTACTCATCAGATCCACCAAACGTATCTGCACCCTCTCCAGGCCCTAAGAATGACGATGAGCATCAAGATATT
GATATTGATGATATTTTTGGGTCTGTTTCATCTGATGATGAAAATAATGCTGAAGAAGATAAAGTTGATGCTGGATTCGATATAAATGTACCACATCATAATGATACCGA
CGATGAGATTGCTGATGTGGATGATAGTGGCGACGAAGCTGAGAAGGGACCTAATGCTGCGGAAGCTCTCAGAGCTCAGGTTAATGCAGAGGGCAGGGAGGGACCTACAG
CTGCAGCAGCCCTGAGGGCTCAGGTTAATGCAGAGGGCAGGGACGAGCAGAGTTCGAGTTCTAGTAGCAGTGAATCGGGCAGTGGCAGCAGCAGCGGAAGTAGCAGTGGC
AGCAGTGACAGTGAAGGAACTGATGAGGATTCAGTTACCTCAATCTGA

mRNA sequence

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AATGAGTAATCCACAGAGCGTCACTGCCGCTGGGACCCACCACTCGTATTTTGTACTTCCACTTTGATTCGCCCCTTTGCTTTCTCCAGCAATGGCGAACAACAACAAAG
AAGAGCCGAAGACGGCGCCCCAGCCCGATCGATGGTATGATCTGTCTCTAGGTCCTTCATTCAACAACGAATCCTCCAACAAATTTTGCACTCTACGATATGAATTTAAA
CCCGCGTCGATCGATAAAACGAAACCGGGATCGCTGAAGAAGACTAAGGAAAATAGGGTTACTATTGAATTTCAGAACAATCAATTGGGGAAACCTAATGTGGCGTTTGT
TGGTAGTAGTGAGGATTACAAGGAGAATGATGCCGTTTTGTTTTTTGACGGCGAGACATTCCGGTTGGAGCGGCTGCACCGGGCGGTCAAGCAGCTTCGGCACCTTCGTC
AGCCGGGCGAATCTTCTGCCGCTGCCGTGGCCGCCGCCTCGTCCACCTCCGCTTCTGCCCTTCATTCTTTGACGCCGCCGGAGCCTCGGCTATCTCCTCCAGCGGCTAAA
GTTCCCAAACCTATGCATATGGGCCGAGGCAGCTTTCCGTCGGTGCTAGTAGAGGTGGAGAAGATAGATATTGGAGAGCCAGGAAATACAGGTGCAAAACCTGTTGTTGC
TAGTAAAGGGCCTGCTGATTACTCATCAGATCCACCAAACGTATCTGCACCCTCTCCAGGCCCTAAGAATGACGATGAGCATCAAGATATTGATATTGATGATATTTTTG
GGTCTGTTTCATCTGATGATGAAAATAATGCTGAAGAAGATAAAGTTGATGCTGGATTCGATATAAATGTACCACATCATAATGATACCGACGATGAGATTGCTGATGTG
GATGATAGTGGCGACGAAGCTGAGAAGGGACCTAATGCTGCGGAAGCTCTCAGAGCTCAGGTTAATGCAGAGGGCAGGGAGGGACCTACAGCTGCAGCAGCCCTGAGGGC
TCAGGTTAATGCAGAGGGCAGGGACGAGCAGAGTTCGAGTTCTAGTAGCAGTGAATCGGGCAGTGGCAGCAGCAGCGGAAGTAGCAGTGGCAGCAGTGACAGTGAAGGAA
CTGATGAGGATTCAGTTACCTCAATCTGA

Protein sequence

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MANNNKEEPKTAPQPDRWYDLSLGPSFNNESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTIEFQNNQLGKPNVAFVGSSEDYKENDAVLFFDGETFRLERLHRAVK
QLRHLRQPGESSAAAVAAASSTSASALHSLTPPEPRLSPPAAKVPKPMHMGRGSFPSVLVEVEKIDIGEPGNTGAKPVVASKGPADYSSDPPNVSAPSPGPKNDDEHQDI
DIDDIFGSVSSDDENNAEEDKVDAGFDINVPHHNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRAQVNAEGRDEQSSSSSSSESGSGSSSGSSSG
SSDSEGTDEDSVTSI

Carg26351 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome