; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg26356 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26356
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationCarg_Chr15:5374646..5375029
RNA-Seq ExpressionCarg26356
SyntenyCarg26356
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579236.1 hypothetical protein SDJN03_23684, partial [Cucurbita argyrosperma subsp. sororia]1.0e-60100Show/hide
Query:  MLPLYFLLLLLLISPSSTTAANPRRLDDSPVKCTPCEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDLYP
        MLPLYFLLLLLLISPSSTTAANPRRLDDSPVKCTPCEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDLYP
Subjt:  MLPLYFLLLLLLISPSSTTAANPRRLDDSPVKCTPCEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDLYP

Query:  IDQNFNAASRRSTAAVVWLLLAGLLLV
        IDQNFNAASRRSTAAVVWLLLAGLLLV
Subjt:  IDQNFNAASRRSTAAVVWLLLAGLLLV

XP_004150475.1 leucine-rich repeat extensin-like protein 6 [Cucumis sativus]2.1e-3771.74Show/hide
Query:  MLPLYFLL---LLLLISPSST-TAANPRRLDDSP------VKCTPCEQNPPSLPPP-IYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFM
        MLPL FLL    LLLISPSS  T+   RRLDD+       VKC PCEQNPPS PPP +YPSPPPPSPPPPD++PYYSPPPPKKK+ K+PNCPPPP  +FM
Subjt:  MLPLYFLL---LLLLISPSST-TAANPRRLDDSP------VKCTPCEQNPPSLPPP-IYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFM

Query:  YITGPPGDLYPIDQNFNAASRRSTAAVVWLLLAGLLLV
        YITGPPGDLYPIDQ +NAA RRS A VV ++LAGLLLV
Subjt:  YITGPPGDLYPIDQNFNAASRRSTAAVVWLLLAGLLLV

XP_008467156.1 PREDICTED: extensin-like [Cucumis melo]9.4e-3873.38Show/hide
Query:  MLPLYFLL---LLLLISPSST-TAANPRRLDDSP------VKCTPCEQNPPSLPPP-IYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFM
        MLPL FLL    LLLISPSS  T+A  RRLDD+       VKC PCEQNPPS PPP +YPSPPPPSPPPPD++PYYSPPPPKKK+ KNPNCPPPP  +FM
Subjt:  MLPLYFLL---LLLLISPSST-TAANPRRLDDSP------VKCTPCEQNPPSLPPP-IYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFM

Query:  YITGPPGDLYPIDQNFNAASRRS-TAAVVWLLLAGLLLV
        YITGPPGDLYPIDQN+NAA RRS  AA V ++LAGLLLV
Subjt:  YITGPPGDLYPIDQNFNAASRRS-TAAVVWLLLAGLLLV

XP_022939204.1 formin-like protein 3 [Cucurbita moschata]7.4e-5998.44Show/hide
Query:  MLPLYF-LLLLLLISPSSTTAANPRRLDDSPVKCTPCEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDLY
        MLPLYF LLLLLLISPSSTTAANPRRLDDSPVKCTPCEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDLY
Subjt:  MLPLYF-LLLLLLISPSSTTAANPRRLDDSPVKCTPCEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDLY

Query:  PIDQNFNAASRRSTAAVVWLLLAGLLLV
        PIDQNFNAA RRSTAAVVWLLLAGLLLV
Subjt:  PIDQNFNAASRRSTAAVVWLLLAGLLLV

XP_023550897.1 extensin-1-like [Cucurbita pepo subsp. pepo]3.1e-5796.09Show/hide
Query:  MLPLYF-LLLLLLISPSSTTAANPRRLDDSPVKCTPCEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDLY
        MLPLYF LLLLLLISPSSTTAAN RRLDDSPVKCTPCEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDLY
Subjt:  MLPLYF-LLLLLLISPSSTTAANPRRLDDSPVKCTPCEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDLY

Query:  PIDQNFNAASRRSTAAVVWLLLAGLLLV
        PIDQNFNAA RRSTAAV+WL+LAGLLLV
Subjt:  PIDQNFNAASRRSTAAVVWLLLAGLLLV

TrEMBL top hitse value%identityAlignment
A0A0A0KPJ1 Uncharacterized protein1.0e-3771.74Show/hide
Query:  MLPLYFLL---LLLLISPSST-TAANPRRLDDSP------VKCTPCEQNPPSLPPP-IYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFM
        MLPL FLL    LLLISPSS  T+   RRLDD+       VKC PCEQNPPS PPP +YPSPPPPSPPPPD++PYYSPPPPKKK+ K+PNCPPPP  +FM
Subjt:  MLPLYFLL---LLLLISPSST-TAANPRRLDDSP------VKCTPCEQNPPSLPPP-IYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFM

Query:  YITGPPGDLYPIDQNFNAASRRSTAAVVWLLLAGLLLV
        YITGPPGDLYPIDQ +NAA RRS A VV ++LAGLLLV
Subjt:  YITGPPGDLYPIDQNFNAASRRSTAAVVWLLLAGLLLV

A0A1S3CT22 extensin-like4.6e-3873.38Show/hide
Query:  MLPLYFLL---LLLLISPSST-TAANPRRLDDSP------VKCTPCEQNPPSLPPP-IYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFM
        MLPL FLL    LLLISPSS  T+A  RRLDD+       VKC PCEQNPPS PPP +YPSPPPPSPPPPD++PYYSPPPPKKK+ KNPNCPPPP  +FM
Subjt:  MLPLYFLL---LLLLISPSST-TAANPRRLDDSP------VKCTPCEQNPPSLPPP-IYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFM

Query:  YITGPPGDLYPIDQNFNAASRRS-TAAVVWLLLAGLLLV
        YITGPPGDLYPIDQN+NAA RRS  AA V ++LAGLLLV
Subjt:  YITGPPGDLYPIDQNFNAASRRS-TAAVVWLLLAGLLLV

A0A6J1FGG4 formin-like protein 33.6e-5998.44Show/hide
Query:  MLPLYF-LLLLLLISPSSTTAANPRRLDDSPVKCTPCEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDLY
        MLPLYF LLLLLLISPSSTTAANPRRLDDSPVKCTPCEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDLY
Subjt:  MLPLYF-LLLLLLISPSSTTAANPRRLDDSPVKCTPCEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDLY

Query:  PIDQNFNAASRRSTAAVVWLLLAGLLLV
        PIDQNFNAA RRSTAAVVWLLLAGLLLV
Subjt:  PIDQNFNAASRRSTAAVVWLLLAGLLLV

A0A6J1GMY1 extensin2.1e-3569.78Show/hide
Query:  MLP---LYFLLLLLLISPSSTTAANPRRLDDSP----VKCTPCEQNPPS-LPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYIT
        MLP   L FL LLLLISPSS++AA  RRLDD+P    VKC+PCEQNPPS  PPP+YPSPPPPSPPPPD++ YYSPPPP KKDHKN +CPPPP   FMYIT
Subjt:  MLP---LYFLLLLLLISPSSTTAANPRRLDDSP----VKCTPCEQNPPS-LPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYIT

Query:  GPPGDLYPIDQNFNAASRR----STAAVVWLLLAGLLLV
        GPPGDLYPIDQ++NAASRR    + +AVV L +AG+L++
Subjt:  GPPGDLYPIDQNFNAASRR----STAAVVWLLLAGLLLV

A0A6J1JNW0 leucine-rich repeat extensin-like protein 36.8e-3466.67Show/hide
Query:  MLP---LYFLLLLLLISPSSTTAANPRRLDDSP---------VKCTPCEQNPPS-LPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSA
        MLP   L FL LLLLISPSS++AA  RRLDD+P         VKC+PCEQNPPS  PPP+YPSPPPPSPPPPD++ YYSPPPP KKDHKN +CPPPP   
Subjt:  MLP---LYFLLLLLLISPSSTTAANPRRLDDSP---------VKCTPCEQNPPS-LPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSA

Query:  FMYITGPPGDLYPIDQNFNAASRR----STAAVVWLLLAGLLLV
        FMYITGPPGDLYPIDQN+NAA+RR    + +AV+ L +AG+L++
Subjt:  FMYITGPPGDLYPIDQNFNAASRR----STAAVVWLLLAGLLLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G02405.1 proline-rich family protein7.0e-0742.86Show/hide
Query:  LLLLLLISPSSTTAANPRRLDDSPVKCTPCEQNPPSLPPPIYPSPPP----PSPPPPDLLPYYSPPPPKKKD-HKNPNCPPPPPSAFMYI-TGPPGDLYP
        + +++L SP    A +     D  V C PC QN P  PPP  PSPPP    PSPPPP      SPPPPKK     +P  PPPPP    Y+ T PPGDLYP
Subjt:  LLLLLLISPSSTTAANPRRLDDSPVKCTPCEQNPPSLPPPIYPSPPP----PSPPPPDLLPYYSPPPPKKKD-HKNPNCPPPPPSAFMYI-TGPPGDLYP

Query:  IDQNFNAASRRSTAAVVWLLLAGLLL
        I+  + AA    + +V+ L + G+++
Subjt:  IDQNFNAASRRSTAAVVWLLLAGLLL

AT1G23040.1 hydroxyproline-rich glycoprotein family protein3.1e-1549.61Show/hide
Query:  MLPLYFLLLLLLISPSSTTAANPRRLDD-SPVKCTP-CEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDL
        M+ L     L+  S SS  +   R+LD+  P+KC+P C QNPP  P P  PSPPPP+ PPP  LP   PPPPKK    +  CPPPPP+ F+YITGPPG+L
Subjt:  MLPLYFLLLLLLISPSSTTAANPRRLDD-SPVKCTP-CEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDL

Query:  YPIDQNFNAASRRSTAAVVWLLLAGLL
        YP+D+ F AA+ +S   V    L+GL+
Subjt:  YPIDQNFNAASRRSTAAVVWLLLAGLL

AT1G70990.1 proline-rich family protein1.6e-1450.43Show/hide
Query:  FLLLLLLISPSSTTAANPRRLDDSPVKCTPCEQN-PPSLPPPIYPSPPPPS---PPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDLYPI
        FL   ++I+ S   ++  R+L++ P+KCTPC QN PP  PPP  PSPPPPS   PPPP       PP P KK +    C PPPPS ++Y+TGPPG+LYPI
Subjt:  FLLLLLLISPSSTTAANPRRLDDSPVKCTPCEQN-PPSLPPPIYPSPPPPS---PPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDLYPI

Query:  DQNFNAASRRSTAAV
        DQ F AA  +S   V
Subjt:  DQNFNAASRRSTAAV

AT3G22800.1 Leucine-rich repeat (LRR) family protein2.5e-0440.91Show/hide
Query:  PSSTTAANPRRLDDSPVKCTPCEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPS--AFMYITGPPGDLYP
        P   + A  +     P+ C     +PPS PPP  P PPPP PPPP   P   PPPP    +  P+ PPPPPS   ++Y   PP  +YP
Subjt:  PSSTTAANPRRLDDSPVKCTPCEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPS--AFMYITGPPGDLYP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCCTCTCTATTTTCTCCTCCTCCTCCTCCTAATTTCCCCCTCCTCCACCACCGCCGCCAACCCCCGCCGCCTCGACGACTCCCCCGTCAAGTGTACCCCATGCGA
GCAAAACCCCCCATCTCTCCCGCCGCCGATCTACCCCTCACCCCCTCCGCCGTCTCCTCCGCCCCCTGACCTCCTCCCCTACTACTCTCCCCCACCGCCCAAGAAGAAGG
ACCACAAGAACCCCAACTGCCCTCCACCTCCGCCTTCCGCGTTCATGTACATAACCGGCCCTCCCGGCGACCTCTATCCAATCGATCAGAATTTTAACGCCGCCAGCCGG
AGATCCACCGCCGCCGTGGTTTGGCTTCTTCTGGCCGGGCTTCTCTTGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCCCTCTCTATTTTCTCCTCCTCCTCCTCCTAATTTCCCCCTCCTCCACCACCGCCGCCAACCCCCGCCGCCTCGACGACTCCCCCGTCAAGTGTACCCCATGCGA
GCAAAACCCCCCATCTCTCCCGCCGCCGATCTACCCCTCACCCCCTCCGCCGTCTCCTCCGCCCCCTGACCTCCTCCCCTACTACTCTCCCCCACCGCCCAAGAAGAAGG
ACCACAAGAACCCCAACTGCCCTCCACCTCCGCCTTCCGCGTTCATGTACATAACCGGCCCTCCCGGCGACCTCTATCCAATCGATCAGAATTTTAACGCCGCCAGCCGG
AGATCCACCGCCGCCGTGGTTTGGCTTCTTCTGGCCGGGCTTCTCTTGGTTTAA
Protein sequenceShow/hide protein sequence
MLPLYFLLLLLLISPSSTTAANPRRLDDSPVKCTPCEQNPPSLPPPIYPSPPPPSPPPPDLLPYYSPPPPKKKDHKNPNCPPPPPSAFMYITGPPGDLYPIDQNFNAASR
RSTAAVVWLLLAGLLLV