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Carg26388 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26388
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein XRI1-like
Genome locationCarg_Chr19:1162101..1164569
RNA-Seq ExpressionCarg26388
SyntenyCarg26388
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0007140 - male meiotic nuclear division (biological process)
GO:0007143 - female meiotic nuclear division (biological process)
GO:0009555 - pollen development (biological process)
GO:0010165 - response to X-ray (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR039933 - Protein XRI1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571588.1 Protein XRI1, partial [Cucurbita argyrosperma subsp. sororia]4.3e-5198.1Show/hide
Query:  NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLC
        ++NKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLC
Subjt:  NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLC

Query:  SPEDL
        SPEDL
Subjt:  SPEDL

KAG7011331.1 Protein XRI1 [Cucurbita argyrosperma subsp. argyrosperma]8.1e-66100Show/hide
Query:  MDDCAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFT
        MDDCAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFT
Subjt:  MDDCAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFT

Query:  DADMLCSPEDLYVSCLHPNCFAYNY
        DADMLCSPEDLYVSCLHPNCFAYNY
Subjt:  DADMLCSPEDLYVSCLHPNCFAYNY

XP_022963649.1 protein XRI1-like [Cucurbita moschata]2.1e-5097.14Show/hide
Query:  NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLC
        ++NKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVS PAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLC
Subjt:  NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLC

Query:  SPEDL
        SPEDL
Subjt:  SPEDL

XP_022967302.1 protein XRI1-like [Cucurbita maxima]1.4e-4996.19Show/hide
Query:  NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLC
        ++NKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVS PAALPEASYGIPECS LSDNVSTFCHENLDHSPEGWIAECFTDADMLC
Subjt:  NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLC

Query:  SPEDL
        SPEDL
Subjt:  SPEDL

XP_023511506.1 protein XRI1-like [Cucurbita pepo subsp. pepo]1.1e-4996.19Show/hide
Query:  NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLC
        ++NKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVS PAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAEC TDADMLC
Subjt:  NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLC

Query:  SPEDL
        SPEDL
Subjt:  SPEDL

TrEMBL top hitse value%identityAlignment
A0A1S3CFL6 protein XRI1 isoform X25.7e-4180.56Show/hide
Query:  CAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDAD
        C+ ++NKKSEESRET SQAKRRRMLQFTAQD+ETSLC EDLSSRFLK+H KDVS  AAL E SYGIPECS L+DNV   CHENLDHSPEGWIAEC  DAD
Subjt:  CAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDAD

Query:  MLCSPEDL
        M CSPEDL
Subjt:  MLCSPEDL

A0A1S3CH27 protein XRI1 isoform X15.7e-4180.56Show/hide
Query:  CAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDAD
        C+ ++NKKSEESRET SQAKRRRMLQFTAQD+ETSLC EDLSSRFLK+H KDVS  AAL E SYGIPECS L+DNV   CHENLDHSPEGWIAEC  DAD
Subjt:  CAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDAD

Query:  MLCSPEDL
        M CSPEDL
Subjt:  MLCSPEDL

A0A5A7SGS7 Protein XRI1 isoform X15.7e-4180.56Show/hide
Query:  CAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDAD
        C+ ++NKKSEESRET SQAKRRRMLQFTAQD+ETSLC EDLSSRFLK+H KDVS  AAL E SYGIPECS L+DNV   CHENLDHSPEGWIAEC  DAD
Subjt:  CAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDAD

Query:  MLCSPEDL
        M CSPEDL
Subjt:  MLCSPEDL

A0A6J1HKT8 protein XRI1-like1.0e-5097.14Show/hide
Query:  NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLC
        ++NKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVS PAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLC
Subjt:  NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLC

Query:  SPEDL
        SPEDL
Subjt:  SPEDL

A0A6J1HQF7 protein XRI1-like6.7e-5096.19Show/hide
Query:  NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLC
        ++NKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVS PAALPEASYGIPECS LSDNVSTFCHENLDHSPEGWIAECFTDADMLC
Subjt:  NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLC

Query:  SPEDL
        SPEDL
Subjt:  SPEDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATTGCGCCAAAAACAAGAACAAGAAATCAGAAGAGTCCAGGGAGACTCAATCACAGGCAAAGAGACGTCGGATGTTACAGTTTACTGCACAAGATATGGAAAC
TTCCCTATGCAATGAAGATTTATCTTCTAGATTCCTAAAAGCACATAAGAAGGATGTTTCCGGTCCAGCTGCTCTCCCGGAAGCTTCATACGGGATTCCCGAGTGTTCTC
AACTCTCAGATAATGTGTCCACTTTCTGTCATGAGAATTTGGATCACTCACCTGAAGGTTGGATTGCTGAATGCTTTACTGATGCTGATATGCTTTGCAGCCCTGAGGAT
TTGTATGTGTCTTGTTTGCATCCGAATTGTTTTGCTTACAATTATTAA
mRNA sequenceShow/hide mRNA sequence
AGTTACTCGGTTAGTGGGCGCTTTTCTCCTTCTTCTCCGCCCCTAAGCCCCCATTATCTAGCACACCACAACTCAAACATCGGGGGACCGAACTGGATTTCTCTTCAAAT
GCTTCTTTTTTGATCGCAGTCAATAGCAGTTCACGAGTGTTGGTCTTGTTTTACTGTTCTAGCCATGGATGATTGCGCCAAAAACAAGAACAAGAAATCAGAAGAGTCCA
GGGAGACTCAATCACAGGCAAAGAGACGTCGGATGTTACAGTTTACTGCACAAGATATGGAAACTTCCCTATGCAATGAAGATTTATCTTCTAGATTCCTAAAAGCACAT
AAGAAGGATGTTTCCGGTCCAGCTGCTCTCCCGGAAGCTTCATACGGGATTCCCGAGTGTTCTCAACTCTCAGATAATGTGTCCACTTTCTGTCATGAGAATTTGGATCA
CTCACCTGAAGGTTGGATTGCTGAATGCTTTACTGATGCTGATATGCTTTGCAGCCCTGAGGATTTGTATGTGTCTTGTTTGCATCCGAATTGTTTTGCTTACAATTATT
AA
Protein sequenceShow/hide protein sequence
MDDCAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPED
LYVSCLHPNCFAYNY