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Carg26389 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26389
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein XRI1-like
Genome locationCarg_Chr19:1161038..1162076
RNA-Seq ExpressionCarg26389
SyntenyCarg26389
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0007140 - male meiotic nuclear division (biological process)
GO:0007143 - female meiotic nuclear division (biological process)
GO:0009555 - pollen development (biological process)
GO:0010165 - response to X-ray (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR039933 - Protein XRI1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571588.1 Protein XRI1, partial [Cucurbita argyrosperma subsp. sororia]1.4e-6298.33Show/hide
Query:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG
        EFCDVIPEFKSNAVQHHPT+TPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG
Subjt:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG

Query:  KTKIHTEGGKGSITIMRTKG
        KTKIHTEGGKGSITIMRT+G
Subjt:  KTKIHTEGGKGSITIMRTKG

KAG7011330.1 Protein XRI1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-83100Show/hide
Query:  MWNSGTLLGLRTFKLMYQVTVDLVMVDDISLFERVEFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDI
        MWNSGTLLGLRTFKLMYQVTVDLVMVDDISLFERVEFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDI
Subjt:  MWNSGTLLGLRTFKLMYQVTVDLVMVDDISLFERVEFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDI

Query:  NQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG
        NQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG
Subjt:  NQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG

XP_022963649.1 protein XRI1-like [Cucurbita moschata]4.6e-6399.17Show/hide
Query:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG
        EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG
Subjt:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG

Query:  KTKIHTEGGKGSITIMRTKG
        KTKIHTEGGKGSITIMRT+G
Subjt:  KTKIHTEGGKGSITIMRTKG

XP_022967302.1 protein XRI1-like [Cucurbita maxima]1.5e-6197.5Show/hide
Query:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG
        EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHH EDPSLSYPTSAFSGKPVVG
Subjt:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG

Query:  KTKIHTEGGKGSITIMRTKG
        KTKIHT+GGKGSITIMRT+G
Subjt:  KTKIHTEGGKGSITIMRTKG

XP_023511506.1 protein XRI1-like [Cucurbita pepo subsp. pepo]4.6e-6399.17Show/hide
Query:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG
        EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG
Subjt:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG

Query:  KTKIHTEGGKGSITIMRTKG
        KTKIHTEGGKGSITIMRT+G
Subjt:  KTKIHTEGGKGSITIMRTKG

TrEMBL top hitse value%identityAlignment
A0A6J1E034 protein XRI13.0e-6094.17Show/hide
Query:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG
        EFCDV+PE KSNAVQHHPTR PRNIIFKGRKSYIRTPTKLASS+AYPFAFIKPCGFHGDVTLKDINQRIRTPPPSK KHHPEDPS SYPTSAFSGKPVVG
Subjt:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG

Query:  KTKIHTEGGKGSITIMRTKG
        KTKIHTEGGKGSITIMRT+G
Subjt:  KTKIHTEGGKGSITIMRTKG

A0A6J1EY26 protein XRI1-like3.4e-5993.33Show/hide
Query:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG
        EFC+V PEFKSNAVQHHPTR PRNIIFKGRKSYIRTPTKLASS+AYPFAFIKPCGFHGDVTLKDINQRIRTPPPSK KH PEDPS SYPTSAFSGKPVVG
Subjt:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG

Query:  KTKIHTEGGKGSITIMRTKG
        KTKIHTEGGKGSITIMRT+G
Subjt:  KTKIHTEGGKGSITIMRTKG

A0A6J1HKT8 protein XRI1-like2.2e-6399.17Show/hide
Query:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG
        EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG
Subjt:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG

Query:  KTKIHTEGGKGSITIMRTKG
        KTKIHTEGGKGSITIMRT+G
Subjt:  KTKIHTEGGKGSITIMRTKG

A0A6J1HQF7 protein XRI1-like7.2e-6297.5Show/hide
Query:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG
        EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHH EDPSLSYPTSAFSGKPVVG
Subjt:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG

Query:  KTKIHTEGGKGSITIMRTKG
        KTKIHT+GGKGSITIMRT+G
Subjt:  KTKIHTEGGKGSITIMRTKG

A0A6J1K0G1 protein XRI1-like2.8e-5892.5Show/hide
Query:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG
        EFC+V PEFKSNAVQHHPTR PRNIIFKGRKSYIRTPTKLASS+AYPFAFIKPCGFHGDVTLKDINQRIRTPPPSK KH PEDPS SYPTSAFSGKPVVG
Subjt:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG

Query:  KTKIHTEGGKGSITIMRTKG
        KTKIHTEG KGSITIMRT+G
Subjt:  KTKIHTEGGKGSITIMRTKG

SwissProt top hitse value%identityAlignment
Q6NLW5 Protein XRI15.0e-3665.83Show/hide
Query:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG
        E+ +V PE ++  VQ   TR+  N+IFKGRKS+ R  +KL SSI YPFAFIKPCG HG +TLKDINQ+IR  PP+K K H E+P++   TSAFSGKPVVG
Subjt:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG

Query:  KTKIHTEGGKGSITIMRTKG
        KTKI TEGGKGSITIMRT+G
Subjt:  KTKIHTEGGKGSITIMRTKG

Arabidopsis top hitse value%identityAlignment
AT1G14630.1 unknown protein8.3e-1045.68Show/hide
Query:  IAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPED----PSLSYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG
        + YPF  +KP G   D+TL DIN+RI  P     +H   D    P +S      SGK VV  TKI T  G+G+ITI+RTKG
Subjt:  IAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPED----PSLSYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG

AT2G01990.1 unknown protein1.5e-1145.35Show/hide
Query:  KLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPED----PSLSYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG
        +L + + YPF  +KP G   DVTL DIN+RI   P    +H   D    P +S      SGK VV  TKI T+ G+G+ITI+RTKG
Subjt:  KLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPED----PSLSYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG

AT5G48720.1 x-ray induced transcript 13.6e-3765.83Show/hide
Query:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG
        E+ +V PE ++  VQ   TR+  N+IFKGRKS+ R  +KL SSI YPFAFIKPCG HG +TLKDINQ+IR  PP+K K H E+P++   TSAFSGKPVVG
Subjt:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG

Query:  KTKIHTEGGKGSITIMRTKG
        KTKI TEGGKGSITIMRT+G
Subjt:  KTKIHTEGGKGSITIMRTKG

AT5G48720.2 x-ray induced transcript 13.6e-3765.83Show/hide
Query:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG
        E+ +V PE ++  VQ   TR+  N+IFKGRKS+ R  +KL SSI YPFAFIKPCG HG +TLKDINQ+IR  PP+K K H E+P++   TSAFSGKPVVG
Subjt:  EFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPSKSKHHPEDPSLSYPTSAFSGKPVVG

Query:  KTKIHTEGGKGSITIMRTKG
        KTKI TEGGKGSITIMRT+G
Subjt:  KTKIHTEGGKGSITIMRTKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAACTCAGGAACTTTGTTGGGACTCCGGACATTCAAATTGATGTATCAGGTGACTGTTGATCTTGTTATGGTGGATGACATTAGTTTATTCGAACGTGTAGAGTT
TTGTGACGTTATACCTGAGTTCAAATCTAATGCCGTTCAACATCATCCTACTCGAACTCCTCGGAACATAATCTTTAAAGGTCGAAAGTCATACATTAGAACTCCCACTA
AACTGGCTTCTTCAATTGCCTACCCATTTGCCTTCATCAAGCCCTGTGGATTCCATGGCGACGTTACCTTGAAAGACATAAACCAGCGGATCCGCACACCTCCACCGTCA
AAATCGAAGCATCATCCGGAAGACCCCTCTCTATCTTACCCAACTTCAGCATTCTCTGGAAAGCCCGTGGTAGGTAAAACCAAGATTCATACCGAAGGCGGTAAGGGAAG
CATCACAATCATGAGGACCAAAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAACTCAGGAACTTTGTTGGGACTCCGGACATTCAAATTGATGTATCAGGTGACTGTTGATCTTGTTATGGTGGATGACATTAGTTTATTCGAACGTGTAGAGTT
TTGTGACGTTATACCTGAGTTCAAATCTAATGCCGTTCAACATCATCCTACTCGAACTCCTCGGAACATAATCTTTAAAGGTCGAAAGTCATACATTAGAACTCCCACTA
AACTGGCTTCTTCAATTGCCTACCCATTTGCCTTCATCAAGCCCTGTGGATTCCATGGCGACGTTACCTTGAAAGACATAAACCAGCGGATCCGCACACCTCCACCGTCA
AAATCGAAGCATCATCCGGAAGACCCCTCTCTATCTTACCCAACTTCAGCATTCTCTGGAAAGCCCGTGGTAGGTAAAACCAAGATTCATACCGAAGGCGGTAAGGGAAG
CATCACAATCATGAGGACCAAAGGTTGAACAAACCGAAAACGATTTCCGCTATCCAGACTTTCCTTTTAACTGCCCGTCGGTCCATCCCGGGGGGATTTGTAAAATGTCA
GGGCCATCAAGTAAGTAGTACAGAAGGTGATTAACTTCCATTTTTGGTCGGGATAGATAGATAGATAGATAAATAGAAAGAAAGAGACAAAGAGAGAGATATGTAGGAGT
ATTAGAGTTGCTCTTGGAATCCCTAATCATATGTTCGAGTTTGTCGACATATGTTTACGCTTCCAAGTGAACTCTTGTAGGTCGTTCGAGTTCAAGCTCGACACCGATAT
GATTATGCATCGTTTTTAGATTTGAAAACACTTCTTATCCTTATGTTTATTATCAAATCATTCCATTCCTTATGCATTGTGAACCTGTTCTGTAATGCTTTTGCTGGAAA
GCTTAAAAGAATTGGATCTCTCTCTCTC
Protein sequenceShow/hide protein sequence
MWNSGTLLGLRTFKLMYQVTVDLVMVDDISLFERVEFCDVIPEFKSNAVQHHPTRTPRNIIFKGRKSYIRTPTKLASSIAYPFAFIKPCGFHGDVTLKDINQRIRTPPPS
KSKHHPEDPSLSYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG