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Carg26560 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26560
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRNA exonuclease 4
Genome locationCarg_Chr02:10031137..10031456
RNA-Seq ExpressionCarg26560
SyntenyCarg26560
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036374.1 hypothetical protein SDJN02_03179, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-32100Show/hide
Query:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
        MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
Subjt:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
XP_022931094.1 uncharacterized protein LOC111437384 isoform X1 [Cucurbita moschata]1.0e-3095.71Show/hide
Query:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
        MRLYKRMRSLNHHGLVTT LIAPPLAQYVAHS+DSY+AKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
Subjt:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
XP_022931095.1 RNA exonuclease 4 isoform X2 [Cucurbita moschata]1.0e-3095.71Show/hide
Query:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
        MRLYKRMRSLNHHGLVTT LIAPPLAQYVAHS+DSY+AKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
Subjt:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
XP_023533248.1 uncharacterized protein LOC111795196 isoform X1 [Cucurbita pepo subsp. pepo]1.2e-2992.86Show/hide
Query:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
        MRLYKRMRSLNHHG VTTPLI+PP A+YVAHSLDSY+AKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
Subjt:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
XP_023533253.1 RNA exonuclease 4-like isoform X3 [Cucurbita pepo subsp. pepo]1.2e-2992.86Show/hide
Query:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
        MRLYKRMRSLNHHG VTTPLI+PP A+YVAHSLDSY+AKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
Subjt:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
TrEMBL top hitse value%identityAlignment
A0A6J1DN23 RNA exonuclease 41.8e-2378.57Show/hide
Query:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
        MRLYKRMR+L+HHG V  P +AP  AQYVAH+LDS++ KDLEKMTPD LYE+SRSNFKCWCLDSRRVMQT
Subjt:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
A0A6J1DNJ6 RNA exonuclease 41.8e-2378.57Show/hide
Query:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
        MRLYKRMR+L+HHG V  P +AP  AQYVAH+LDS++ KDLEKMTPD LYE+SRSNFKCWCLDSRRVMQT
Subjt:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
A0A6J1ETD0 RNA exonuclease 45.1e-3195.71Show/hide
Query:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
        MRLYKRMRSLNHHGLVTT LIAPPLAQYVAHS+DSY+AKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
Subjt:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
A0A6J1EYI8 RNA exonuclease 45.1e-3195.71Show/hide
Query:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
        MRLYKRMRSLNHHGLVTT LIAPPLAQYVAHS+DSY+AKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
Subjt:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
A0A6J1K8M7 RNA exonuclease 41.4e-2890Show/hide
Query:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
        MRLYKRMRSLNHHG V TPLIAPPL QYV+HSLDSY+AKDLEKMTPD LYELSRSNFKCWCLDSR VMQT
Subjt:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G48100.1 Exonuclease family protein2.5e-0641.27Show/hide
Query:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLD
        MRLYKRMR   H        +    A+   + L+S    DLEKM  + LY+ S S ++CWCLD
Subjt:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLD
AT2G48100.2 Exonuclease family protein2.5e-0641.27Show/hide
Query:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLD
        MRLYKRMR   H        +    A+   + L+S    DLEKM  + LY+ S S ++CWCLD
Subjt:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLD
AT2G48100.3 Exonuclease family protein2.5e-0641.27Show/hide
Query:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLD
        MRLYKRMR   H        +    A+   + L+S    DLEKM  + LY+ S S ++CWCLD
Subjt:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLD
AT3G27970.1 Exonuclease family protein7.3e-0640.62Show/hide
Query:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDS
        MRLY RMR    H +   PL A   AQ  ++ + ++   + E+M+PD +  +SRS++ CWCLDS
Subjt:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDS
AT5G40310.1 Exonuclease family protein1.5e-0640.91Show/hide
Query:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVA--HSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDS
        MRLY RMR   H         A PLA      ++  ++   +LE+M+P+ L +LSRS++ CWCLDS
Subjt:  MRLYKRMRSLNHHGLVTTPLIAPPLAQYVA--HSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGATTGTACAAGAGAATGCGCAGTCTTAATCATCATGGACTAGTTACGACACCGTTGATTGCTCCTCCCCTTGCTCAGTATGTTGCTCACAGTCTTGATTCCTATAA
TGCAAAAGATCTTGAGAAGATGACTCCAGATACACTTTATGAGTTATCGAGATCGAACTTTAAGTGTTGGTGTCTTGACTCGAGACGAGTAATGCAGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGATTGTACAAGAGAATGCGCAGTCTTAATCATCATGGACTAGTTACGACACCGTTGATTGCTCCTCCCCTTGCTCAGTATGTTGCTCACAGTCTTGATTCCTATAA
TGCAAAAGATCTTGAGAAGATGACTCCAGATACACTTTATGAGTTATCGAGATCGAACTTTAAGTGTTGGTGTCTTGACTCGAGACGAGTAATGCAGACTTAGGATCAGA
TCATTTTCATTTTCTGCTGGGAAGAAAAGGCATAGACAGTACTCATATTGATGGGGAGAGGTGAGGTTGTTGGATGATGAAAAAGGGGGAAATGAGAAGG
Protein sequenceShow/hide protein sequence
MRLYKRMRSLNHHGLVTTPLIAPPLAQYVAHSLDSYNAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT