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Carg26562 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26562
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSm-like protein LSM2
Genome locationCarg_Chr02:10035901..10038179
RNA-Seq ExpressionCarg26562
SyntenyCarg26562
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0000932 - P-body (cellular component)
GO:0005688 - U6 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0120115 - Lsm2-8 complex (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR016654 - U6 snRNA-associated Sm-like protein LSm2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5947938.1 hypothetical protein HYC85_013895 [Camellia sinensis]1.2e-45100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

XP_008461281.1 PREDICTED: sm-like protein LSM2 [Cucumis melo]1.5e-4598.92Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

XP_010038129.1 sm-like protein LSM2 [Eucalyptus grandis]1.2e-45100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

XP_039035726.1 sm-like protein LSM2 [Hibiscus syriacus]1.5e-4598.92Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRV+DQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

XP_039061884.1 sm-like protein LSM2 [Hibiscus syriacus]1.2e-45100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

TrEMBL top hitse value%identityAlignment
A0A0B0N830 Sm-like protein LSM25.7e-46100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A5D2BJZ3 Sm-like protein LSM25.7e-46100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A5D2TT01 Sm-like protein LSM25.7e-46100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A5J5UQ23 Sm-like protein LSM25.7e-46100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A6J1E038 Sm-like protein LSM25.7e-46100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

SwissProt top hitse value%identityAlignment
O35900 U6 snRNA-associated Sm-like protein LSm23.1e-3374.44Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

P38203 U6 snRNA-associated Sm-like protein LSm25.7e-2766.29Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE
        MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D+ KYPH+ SVRN FIRGS VRYV L  + VD  LL DATRRE
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE

Q1H595 Sm-like protein LSM24.2e-4694.62Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

Q54TF6 Probable U6 snRNA-associated Sm-like protein LSm21.1e-3067.03Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR
        MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NCFIRGSVVRYV LP + VD+E L D +R EAR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR

Q9Y333 U6 snRNA-associated Sm-like protein LSm23.1e-3374.44Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Arabidopsis top hitse value%identityAlignment
AT1G03330.1 Small nuclear ribonucleoprotein family protein3.0e-4794.62Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREARGG
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

AT3G07590.1 Small nuclear ribonucleoprotein family protein2.4e-0429.27Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL
        M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+ +RY  L PD +++E L
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL

AT3G07590.2 Small nuclear ribonucleoprotein family protein2.4e-0429.27Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL
        M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+ +RY  L PD +++E L
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL

AT3G59810.1 Small nuclear ribonucleoprotein family protein4.1e-0433.85Show/hide
Query:  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYV
        + K + GR V V+L + +  RGTL  +D Y+NI +E T      +  +     + FIRG+ V Y+
Subjt:  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYV

AT4G02840.1 Small nuclear ribonucleoprotein family protein2.4e-0429.27Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL
        M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+ +RY  L PD +++E L
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTTTTTCTCGTACTTCAAGGACTTGGTGGGCAGAGAGGTGACGGTTGAGTTGAAGAACGACCTAGCAATCAGAGGAACTTTGCACTCTGTAGATCAGTATCTCAA
CATTAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCACATGCTTTCAGTGAGAAACTGCTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCAC
CGGATGGTGTTGATATCGAGCTGTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGCTAA
mRNA sequenceShow/hide mRNA sequence
TGTTCCCTAATATCGTTTTCCCTTCTGTTTGTGATAGTTCGGGCCGCATTTCGACCTTTGCCGGTCGTCGAACGTCGAAAGCAGATAGACTGAAGGCCGGCAGTTTAAAT
CTCTAGTGAAAATGTTGTTTTTCTCGTACTTCAAGGACTTGGTGGGCAGAGAGGTGACGGTTGAGTTGAAGAACGACCTAGCAATCAGAGGAACTTTGCACTCTGTAGAT
CAGTATCTCAACATTAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCACATGCTTTCAGTGAGAAACTGCTTTATCAGGGGATCGGTGGTGAGATATGT
TCAACTTCCACCGGATGGTGTTGATATCGAGCTGTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGCTAA
Protein sequenceShow/hide protein sequence
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG