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Carg26594 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26594
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMitochondrial 28S Ribosomal protein
Genome locationCarg_Chr02:4286467..4289080
RNA-Seq ExpressionCarg26594
SyntenyCarg26594
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR032053 - Mitochondrial 28S ribosomal protein S34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605433.1 hypothetical protein SDJN03_02750, partial [Cucurbita argyrosperma subsp. sororia]3.2e-80100Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS

XP_022947647.1 uncharacterized protein LOC111451448 [Cucurbita moschata]3.6e-7998.72Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLS SSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSL RSLENEPTTMTNLGESNPSAEVQSS
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS

XP_023007567.1 uncharacterized protein LOC111500023 [Cucurbita maxima]5.1e-7897.44Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLS SSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAK HWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRS ENEPTTMTNLGESNPSAEVQ+S
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS

XP_023532313.1 uncharacterized protein LOC111794505 [Cucurbita pepo subsp. pepo]1.1e-7796.79Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLS SSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSL RS ENEPTTMTNLGESNPSAE Q+S
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS

XP_038900676.1 uncharacterized protein LOC120087826 [Benincasa hispida]1.3e-6080.52Show/hide
Query:  VANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIA
        VANRT ISRALDFSRL+S+FIR FSTS+ S SSS+P+AS A++KNKRRKKKKNLFEV+QFLPNWGVGYHVAK HWDEISYQITKINLYKNGTHGKAWGIA
Subjt:  VANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIA

Query:  HKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS
        HK+G PIAEAPKKISGVHKRCWKYI SL RS           GESNPSAEVQ+S
Subjt:  HKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS

TrEMBL top hitse value%identityAlignment
A0A1S3CKN2 uncharacterized protein LOC1035020493.7e-5877.56Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRT ISRALDFSRL+SSFIR F++S+ S SSS+P+AS ++S+ KRRKKKKNLFEVIQFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNG PI EAPKKISGVHKRCWKYI SL R           LGES  SAEVQ+S
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS

A0A5A7V0Y6 Uncharacterized protein3.7e-5877.56Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRT ISRALDFSRL+SSFIR F++S+ S SSS+P+AS ++S+ KRRKKKKNLFEVIQFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNG PI EAPKKISGVHKRCWKYI SL R           LGES  SAEVQ+S
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS

A0A6J1D4Z3 uncharacterized protein LOC1110169886.4e-5876.92Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        M+VANR  I+RALDFS+L+S+FIR FSTS+ S SSS+P+ASAA+S  KRRKKKKNLFEV+QFLP WGVGYHVAK HWDEISYQITKINLYKNG HGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS
        IAHK+G PIAEAPKKISGVHKRCW+YI  LS   E+ PTT  ++ ESNPSAEVQ+S
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS

A0A6J1G714 uncharacterized protein LOC1114514481.7e-7998.72Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLS SSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSL RSLENEPTTMTNLGESNPSAEVQSS
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS

A0A6J1KZ28 uncharacterized protein LOC1115000232.5e-7897.44Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLS SSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAK HWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRS ENEPTTMTNLGESNPSAEVQ+S
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G52370.1 unknown protein5.0e-3961.65Show/hide
Query:  TTISRALDFS------RLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        T I+RA+  +      RL+ + +RNFS +  S + S  S     SK KRR KKKNL EV QFLPNWG+GYH+AK HW+ ISY+ITKINLYK+G HGKAWG
Subjt:  TTISRALDFS------RLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRS
        I HK+G   AEAPKKISGVHKRCWKYIP+LS++
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRS

AT5G58990.1 unknown protein7.7e-4061.6Show/hide
Query:  LASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKIS
        L+ S +RNFS +  +AS+      ++ S   +R+KKKNL EV QFLPNWG+GYH+AK HW+ ISY+ITKINLYK+G HGKAWGI HK+G   AEAPKKIS
Subjt:  LASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKIS

Query:  GVHKRCWKYIPSLSRSLENEPTTMT
        GVHKRCWKYIP+LS++    P T T
Subjt:  GVHKRCWKYIPSLSRSLENEPTTMT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTCGCCAACAGAACTACGATCAGTCGAGCCCTAGATTTCTCCAGGCTAGCTTCGAGCTTTATCAGAAACTTCAGCACTTCTACGCTGTCAGCCTCTTCTTCGGA
TCCCAGTGCCTCGGCTGCTGCGAGTAAAAACAAGCGGAGGAAGAAGAAGAAGAACCTGTTCGAAGTAATTCAGTTTTTGCCCAATTGGGGAGTAGGATACCATGTCGCCA
AGGGTCACTGGGATGAAATATCGTACCAGATCACCAAGATTAATCTGTATAAGAATGGCACGCATGGCAAGGCTTGGGGCATCGCTCATAAAAATGGCGCGCCCATTGCT
GAAGCTCCAAAGAAGATCAGTGGAGTTCACAAGCGCTGTTGGAAGTATATCCCAAGCTTGTCAAGATCATTAGAGAACGAACCAACCACAATGACGAATTTGGGAGAAAG
CAACCCATCAGCTGAGGTTCAAAGTTCATGA
mRNA sequenceShow/hide mRNA sequence
CATTTTCACTTAGTACCGGAGAGGAGCAACCAAACCTAGAGAGAGAGACGCCAATGGCTGTCGCCAACAGAACTACGATCAGTCGAGCCCTAGATTTCTCCAGGCTAGCT
TCGAGCTTTATCAGAAACTTCAGCACTTCTACGCTGTCAGCCTCTTCTTCGGATCCCAGTGCCTCGGCTGCTGCGAGTAAAAACAAGCGGAGGAAGAAGAAGAAGAACCT
GTTCGAAGTAATTCAGTTTTTGCCCAATTGGGGAGTAGGATACCATGTCGCCAAGGGTCACTGGGATGAAATATCGTACCAGATCACCAAGATTAATCTGTATAAGAATG
GCACGCATGGCAAGGCTTGGGGCATCGCTCATAAAAATGGCGCGCCCATTGCTGAAGCTCCAAAGAAGATCAGTGGAGTTCACAAGCGCTGTTGGAAGTATATCCCAAGC
TTGTCAAGATCATTAGAGAACGAACCAACCACAATGACGAATTTGGGAGAAAGCAACCCATCAGCTGAGGTTCAAAGTTCATGAGACTGCAGAGAAATTTAAGCTGCTGA
TTCTTTTTGGCCTACCTTATTTCCAGGTTCACAGAGTTCTAATTCTCTCTATATTAGCAGTCCTTAAATGTAGTCAGGTTTCCTAACGCCATCATATGAGGAGCATTTTG
AGCTTTGCTTGTTTCCGAGATAAAAGAAAGATCAATCATCCCGAACTATGTGTAAGTTAGAACTTGTTTCCTATTCTCAGTTACTACTGGATTTTTATGTTAAATAGGTT
GAAGAATCTAGTTGGTATTTGTTAATCTGTGTTCTTCGTCCTGCCGTGAGACGAACATAAAAAAAATACTCATGAACATGTTCTTTTGTTTAAAATTACTTGCTGAATTA
GAAATTTATTAGAATATTAGATGAAAAGTTGATGTGACATTAACTTAAGACGGTGCGTCACTGATTAGGACTTTGGCCAAAATTAAGTCTAAAAAGAAAAATGTTCCATC
GGGTTGGCTTCCGGTTCAATATTTTTTACCCTAAAAGTAGTTTGAAATGTTTACGAAAGTCAAAGATAAAATTAC
Protein sequenceShow/hide protein sequence
MAVANRTTISRALDFSRLASSFIRNFSTSTLSASSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIA
EAPKKISGVHKRCWKYIPSLSRSLENEPTTMTNLGESNPSAEVQSS