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Carg26600 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26600
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S rib s in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Genome locationCarg_Chr04:15948315..15948767
RNA-Seq ExpressionCarg26600
SyntenyCarg26600
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601820.1 hypothetical protein SDJN03_07053, partial [Cucurbita argyrosperma subsp. sororia]3.4e-7999.33Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRR ALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
Subjt:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

KAG7032525.1 hypothetical protein SDJN02_06574, partial [Cucurbita argyrosperma subsp. argyrosperma]6.9e-80100Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
Subjt:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

XP_022963063.1 uncharacterized protein LOC111463373 [Cucurbita moschata]6.5e-7898Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        RNVTPVCREEDGEIGPT WHPGSPRPGWTGFR+KYLLRKTWRPLLA IPE
Subjt:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

XP_022971824.1 uncharacterized protein LOC111470493 [Cucurbita maxima]4.6e-7697.33Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA    RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
Subjt:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

XP_023513243.1 uncharacterized protein LOC111777755 [Cucurbita pepo subsp. pepo]2.2e-7898.67Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDES+ EINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
Subjt:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

TrEMBL top hitse value%identityAlignment
A0A0A0KPK6 Uncharacterized protein1.6e-6179.74Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPD-KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAP
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRRR+LP+ K RDD K LSRSNTLKDLFVSSPPY  +D ++++T   AP
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPD-KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAP

Query:  IRNVTPVC--REEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
         RNVTPVC   +E+G +G  GW+PGSPRPGWTGFRYKYLLRKTWRP+L GIPE
Subjt:  IRNVTPVC--REEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

A0A6J1DFV6 uncharacterized protein LOC1110200649.8e-6484.87Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRRRALPDKKR DH DL+RSNTLKDLFVSSPPYD +DGEI E  A A  
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  R-NVTPVCRE-EDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
          N+ PVC+E EDGE+G TGW PGSPRP WTGFRYKYLLRKTWRP+LAGIPE
Subjt:  R-NVTPVCRE-EDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

A0A6J1HGM7 uncharacterized protein LOC1114633733.1e-7898Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        RNVTPVCREEDGEIGPT WHPGSPRPGWTGFR+KYLLRKTWRPLLA IPE
Subjt:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

A0A6J1I9M9 uncharacterized protein LOC1114704932.2e-7697.33Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA    RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
Subjt:  RNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

A0A6J1K1U6 uncharacterized protein LOC1114898571.3e-6080.79Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLL THCGVAQSPTLSPRTSPL+HLRRRKTTLRMLLTRN +RRSPRR ALP+K  DD KDLSR N LKDLFVSSPPYD +DG INET  AAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREE-DGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
        RNVTPVC+++ +  IG  G  PGSPRPGWTGFRYKYLL+KTWRP+LAGIPE
Subjt:  RNVTPVCREE-DGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G66890.1 FUNCTIONS IN: molecular_function unknown6.3e-1542.59Show/hide
Query:  SLLKFKLLPTHCG-VAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSAR-RSPRRRALPD--KKRDDHKDLSRSNTLKDLFVSSPPYDESDG---------
        SL KFKLL THC  VA+SPT     SP++HLRRRK TLR+LLTR+S R R P  +   D  KK D    +  S  L DLFVSSPP++ES G         
Subjt:  SLLKFKLLPTHCG-VAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSAR-RSPRRRALPD--KKRDDHKDLSRSNTLKDLFVSSPPYDESDG---------

Query:  -EINETVAAAPIRNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
         E+ E     P+  V+      +          GS RP  +      LLR++WRP+L  IPE
Subjt:  -EINETVAAAPIRNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

AT1G68430.1 unknown protein9.8e-1642.5Show/hide
Query:  MASLLKFKLLPTHCGV-AQSPTL--SPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESD-------GE
        MA+L +FK L T CGV AQSPT   SPRTSPLV LRR+KTTL+MLL    +  SP RR         HKD++    LKDLFVSS   +E         G+
Subjt:  MASLLKFKLLPTHCGV-AQSPTL--SPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESD-------GE

Query:  INETVAAAPIRNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE
          E V AA    +    R +               P W GF  K LL++ WRP L  I E
Subjt:  INETVAAAPIRNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE

AT5G16200.1 50S ribosomal protein-related4.0e-0937.36Show/hide
Query:  MASLLKFKLLPTH----CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS-ARRSPRRRALPD----------KKRDDHKDLSRSNTLKDLFVS--SPP
        ++ L KFKL   H       A SPT+SP  SP+ +LRRRK TLRML  ++S +RR   R+ L +          KKR +H+   R   L++L V+  SPP
Subjt:  MASLLKFKLLPTH----CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS-ARRSPRRRALPD----------KKRDDHKDLSRSNTLKDLFVS--SPP

Query:  Y---DESDGEINETVAAAPIRNVTPVCREEDGEIGPTGWHPGSPRPGWTG----FRYKYLLRKTWRPLLAGIPE
        Y   ++ DG   E    +P+ NVT      +G+    G    + R G +G    FR + +LRK WRP+L  IPE
Subjt:  Y---DESDGEINETVAAAPIRNVTPVCREEDGEIGPTGWHPGSPRPGWTG----FRYKYLLRKTWRPLLAGIPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACCCATTGCGGCGTCGCTCAGAGTCCCACCTTGAGCCCTAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAAC
CACCCTCCGGATGCTCCTCACTCGGAATTCCGCCCGCCGCTCGCCCCGTCGCCGCGCCTTGCCGGATAAGAAACGAGACGACCACAAGGATTTGTCTCGGAGCAACACGT
TGAAGGATTTGTTCGTGTCATCACCGCCGTATGATGAATCCGACGGCGAGATTAACGAGACCGTTGCGGCAGCTCCGATCCGGAACGTGACTCCGGTTTGTAGGGAGGAG
GATGGTGAGATTGGACCGACCGGTTGGCATCCAGGTTCGCCTAGACCGGGTTGGACCGGTTTCCGATACAAATACTTGCTCCGGAAAACCTGGCGGCCACTGCTCGCCGG
AATCCCCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACCCATTGCGGCGTCGCTCAGAGTCCCACCTTGAGCCCTAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAAC
CACCCTCCGGATGCTCCTCACTCGGAATTCCGCCCGCCGCTCGCCCCGTCGCCGCGCCTTGCCGGATAAGAAACGAGACGACCACAAGGATTTGTCTCGGAGCAACACGT
TGAAGGATTTGTTCGTGTCATCACCGCCGTATGATGAATCCGACGGCGAGATTAACGAGACCGTTGCGGCAGCTCCGATCCGGAACGTGACTCCGGTTTGTAGGGAGGAG
GATGGTGAGATTGGACCGACCGGTTGGCATCCAGGTTCGCCTAGACCGGGTTGGACCGGTTTCCGATACAAATACTTGCTCCGGAAAACCTGGCGGCCACTGCTCGCCGG
AATCCCCGAGTAA
Protein sequenceShow/hide protein sequence
MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVCREE
DGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE