CuGenDBv2

Gene ID	Carg26611
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	importin subunit beta-1-like
Genome location	Carg_Chr15:6970702..6971664
RNA-Seq Expression	Carg26611
Synteny	Carg26611
Gene Ontology terms	GO:0006606 - protein import into nucleus (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0008139 - nuclear localization sequence binding (molecular function) GO:0031267 - small GTPase binding (molecular function) GO:0061608 - nuclear import signal receptor activity (molecular function)
InterPro domains	IPR011989 - Armadillo-like helical IPR016024 - Armadillo-type fold IPR027140 - Importin subunit beta-1, plants IPR040122 - Importin beta family

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6579316.1 Importin subunit beta-1, partial [Cucurbita argyrosperma subsp. sororia]

9.5e-20

62.63

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Query:  PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
        PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQV                                 + G  GNEEKPVDSRKLA
Subjt:  PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA

KAG7016818.1 Importin subunit beta-1, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.7e-49

100

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Query:  PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLAR
        PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLAR
Subjt:  PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLAR

Query:  CTEV
        CTEV
Subjt:  CTEV

XP_022137873.1 importin subunit beta-1-like [Momordica charantia]

6.8e-18

98.11

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Query:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
        QVLLNAQSIDA VRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
Subjt:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA

XP_022922215.1 importin subunit beta-1-like [Cucurbita moschata]

1.4e-18

100

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Query:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
        QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
Subjt:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA

XP_023550103.1 importin subunit beta-1-like [Cucurbita pepo subsp. pepo]

1.4e-18

100

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Query:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
        QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
Subjt:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CBJ5 importin subunit beta-1-like

3.3e-18

98.11

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Query:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
        QVLLNAQSIDA VRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
Subjt:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA

A0A6J1E840 importin subunit beta-1-like

6.6e-19

100

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Query:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
        QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
Subjt:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA

A0A6J1H2D7 importin subunit beta-1-like

2.8e-17

96.23

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Query:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
        QVLLNAQSIDA VRKQAEDSLRQFQEQNLP FLLSLSGELGNEEKPVDSRKLA
Subjt:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA

A0A6J1IBM1 importin subunit beta-1-like

6.6e-19

100

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Query:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
        QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
Subjt:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA

A0A6J1K098 importin subunit beta-1-like

1.6e-17

96.23

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Query:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
        QVLLNAQSIDA VRKQAEDSLRQFQEQNLP FLLSLSGELGNEEKPVDSRKLA
Subjt:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA

SwissProt top hits

e value

%identity

Alignment

Q9FJD4 Importin subunit beta-1

1.5e-15

77.36

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Query:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
        Q+L+NAQSID  VRK AE+SL+QFQEQNL  FLLSL+GEL N+EKPVDSRKLA
Subjt:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA

Arabidopsis top hits

e value

%identity

Alignment

AT3G08943.1 ARM repeat superfamily protein

5.4e-13

71.7

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Query:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
        Q LL AQS DA VR +AE SLRQFQEQNLP FLLSLS EL N +KP +SR+LA
Subjt:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA

AT3G08947.1 ARM repeat superfamily protein

1.2e-12

67.92

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Query:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
        Q LL AQS DA VR +AE +LRQFQEQNLP FL+SLS EL N +KP +SR+LA
Subjt:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA

AT5G53480.1 ARM repeat superfamily protein

1.0e-16

77.36

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Query:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
        Q+L+NAQSID  VRK AE+SL+QFQEQNL  FLLSL+GEL N+EKPVDSRKLA
Subjt:  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA

Sequences

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CDS sequence

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CCTTTGCGCCCTTCCATTTTCTTCTCCCTCCTCTCTTCCTTTTGCCCCTTCCCTTCCTCTAGGGTTCCTCCAACTGCCGTCTTTTCGCTCCTCCACACTCTCTTCTTCTT
TCTTCCAATCCCTTCAATTTTCCCAATCCAGGTTCTTCTGAATGCACAGTCAATAGATGCAAATGTGAGGAAGCAGGCAGAGGATAGTTTAAGGCAATTTCAGGAGCAAA
ACCTTCCCAGTTTCTTGCTGTCTCTCTCTGGTGAATTAGGCAATGAGGAAAAGCCAGTTGATAGTCGTAAATTAGCCCGGTGTACTGAGGTGTAG

mRNA sequence

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Protein sequence

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PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLARCTEV

Carg26611 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome