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Carg26666 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26666
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionStructural constituent of nuclear pore isoform 1
Genome locationCarg_Chr17:3154106..3156010
RNA-Seq ExpressionCarg26666
SyntenyCarg26666
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575228.1 hypothetical protein SDJN03_25867, partial [Cucurbita argyrosperma subsp. sororia]1.2e-58100Show/hide
Query:  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC
        MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC
Subjt:  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC

Query:  KGFQWLLTDPTLK
        KGFQWLLTDPTLK
Subjt:  KGFQWLLTDPTLK

KAG7013797.1 hypothetical protein SDJN02_23964 [Cucurbita argyrosperma subsp. argyrosperma]7.4e-64100Show/hide
Query:  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC
        MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC
Subjt:  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC

Query:  KGFQWLLTDPTLKVQIRDALPL
        KGFQWLLTDPTLKVQIRDALPL
Subjt:  KGFQWLLTDPTLKVQIRDALPL

XP_022959467.1 uncharacterized protein LOC111460433 [Cucurbita moschata]4.6e-5899.12Show/hide
Query:  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC
        MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFS ESLSKWLQPLVNSYDSSILHSRGYQLLC
Subjt:  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC

Query:  KGFQWLLTDPTLK
        KGFQWLLTDPTLK
Subjt:  KGFQWLLTDPTLK

XP_023006653.1 uncharacterized protein LOC111499314 [Cucurbita maxima]7.6e-5392.98Show/hide
Query:  MAFKSRPVV-SSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLL
        MAFKS PVV SSTC+NCGCDTCKS FCGREIQSLDTKAGKSLHKFDLGPVPSR+EVDAAV ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGY LL
Subjt:  MAFKSRPVV-SSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLL

Query:  CKGFQWLLTDPTLK
        CKG QWLLTDPTLK
Subjt:  CKGFQWLLTDPTLK

XP_023549361.1 uncharacterized protein LOC111807735 [Cucurbita pepo subsp. pepo]8.2e-5595.58Show/hide
Query:  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC
        MAFKS PVVSSTCNNCGCDTCKS FCG EIQSLDTKA KSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC
Subjt:  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC

Query:  KGFQWLLTDPTLK
        KGFQWLLTDP+LK
Subjt:  KGFQWLLTDPTLK

TrEMBL top hitse value%identityAlignment
A0A1S3CC23 uncharacterized protein LOC1034987724.4e-3066.37Show/hide
Query:  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC
        MAFKS   V ST ++ G +T  S   GREI++L T        FDLGPVPS  EV+AAV ALQSLLQE+FS+ES+SKWLQPL+NS  SSILHSRGYQLLC
Subjt:  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC

Query:  KGFQWLLTDPTLK
        KGFQW+LTDPT K
Subjt:  KGFQWLLTDPTLK

A0A5D3DM87 Uncharacterized protein4.4e-3066.37Show/hide
Query:  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC
        MAFKS   V ST ++ G +T  S   GREI++L T        FDLGPVPS  EV+AAV ALQSLLQE+FS+ES+SKWLQPL+NS  SSILHSRGYQLLC
Subjt:  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC

Query:  KGFQWLLTDPTLK
        KGFQW+LTDPT K
Subjt:  KGFQWLLTDPTLK

A0A6J1DU63 uncharacterized protein LOC1110235034.1e-2865.71Show/hide
Query:  VSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLT
        ++S C +CG +TCKS  CG EIQ  D  A KS  KFDLGPVPS  EVDAAVTALQS LQE FS  S+SKWLQP++N  DS ILHS GYQL+ K FQWL T
Subjt:  VSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLT

Query:  DPTLK
        DP+ K
Subjt:  DPTLK

A0A6J1H4L7 uncharacterized protein LOC1114604332.2e-5899.12Show/hide
Query:  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC
        MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFS ESLSKWLQPLVNSYDSSILHSRGYQLLC
Subjt:  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLC

Query:  KGFQWLLTDPTLK
        KGFQWLLTDPTLK
Subjt:  KGFQWLLTDPTLK

A0A6J1L5J5 uncharacterized protein LOC1114993143.7e-5392.98Show/hide
Query:  MAFKSRPVV-SSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLL
        MAFKS PVV SSTC+NCGCDTCKS FCGREIQSLDTKAGKSLHKFDLGPVPSR+EVDAAV ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGY LL
Subjt:  MAFKSRPVV-SSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLL

Query:  CKGFQWLLTDPTLK
        CKG QWLLTDPTLK
Subjt:  CKGFQWLLTDPTLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCAAATCGCGTCCTGTAGTTTCATCCACCTGCAACAACTGCGGTTGCGACACTTGCAAGAGCTTCTTCTGTGGAAGAGAAATCCAGAGTTTAGATACCAAAGC
TGGGAAATCTCTTCACAAATTTGATTTAGGACCTGTTCCATCGCGTGCCGAAGTTGATGCTGCAGTTACTGCGCTTCAGAGTTTGCTGCAGGAATATTTTTCAATTGAAT
CGCTGTCAAAATGGCTTCAGCCGCTGGTGAACTCCTACGATTCAAGCATTTTGCATTCTCGTGGCTATCAATTACTTTGCAAAGGTTTTCAATGGCTGCTAACAGATCCT
ACTTTGAAGGTACAAATCAGGGATGCCTTGCCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCCTCTTCGATGGCTTTCAAATCGCGTCCTGTAGTTTCATCCACCTGCAACAACTGCGGTTGCGACACT
TGCAAGAGCTTCTTCTGTGGAAGAGAAATCCAGAGTTTAGATACCAAAGCTGGGAAATCTCTTCACAAATTTGATTTAGGACCTGTTCCATCGCGTGCCGAAGTTGATGC
TGCAGTTACTGCGCTTCAGAGTTTGCTGCAGGAATATTTTTCAATTGAATCGCTGTCAAAATGGCTTCAGCCGCTGGTGAACTCCTACGATTCAAGCATTTTGCATTCTC
GTGGCTATCAATTACTTTGCAAAGGTTTTCAATGGCTGCTAACAGATCCTACTTTGAAGGTACAAATCAGGGATGCCTTGCCTCTTTAATAATGACTATTTGTTTATCTC
AACAAGTTCTTTTATTCATCTTTTTTGGTCACAGAAACAAAACTTCCTTTGACAATGAAAGCTTACAACATAAATAGCATCTAATAAACAAAATTTTGATACATCTCAAA
AACAACCCAAAAGTTCAACAAAATAGTCAAGAGTTATAGAATAACTTAGAAACAAACATCAACACAGACAATGAAACTTGGCCAAGTCCATGAACTTTCTCTAATCTCTG
AACTTTTCATTATGATTCCTATTATTTCTTTCTAACCAAACTGTCA
Protein sequenceShow/hide protein sequence
MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDP
TLKVQIRDALPL