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Carg26669 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26669
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGolgi to ER traffic protein 4 homolog
Genome locationCarg_Chr17:3189004..3190199
RNA-Seq ExpressionCarg26669
SyntenyCarg26669
Gene Ontology termsGO:0045048 - protein insertion into ER membrane (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR007317 - Golgi to ER traffic protein 4
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575235.1 Golgi to ER traffic protein 4-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.4e-34100Show/hide
Query:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV
        MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV
Subjt:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV

KAG7013800.1 hypothetical protein SDJN02_23967, partial [Cucurbita argyrosperma subsp. argyrosperma]4.1e-50100Show/hide
Query:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQVKASCIFSAYVIAGLNVILAFA
        MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQVKASCIFSAYVIAGLNVILAFA
Subjt:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQVKASCIFSAYVIAGLNVILAFA

Query:  AQCILILKF
        AQCILILKF
Subjt:  AQCILILKF

XP_022959413.1 Golgi to ER traffic protein 4 homolog [Cucurbita moschata]1.4e-34100Show/hide
Query:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV
        MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV
Subjt:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV

XP_023006615.1 Golgi to ER traffic protein 4 homolog isoform X2 [Cucurbita maxima]4.2e-3498.73Show/hide
Query:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV
        MSSHPLQKTMSRARSRRIVLPPVQEHI+KIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV
Subjt:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV

XP_023522834.1 Golgi to ER traffic protein 4 homolog [Cucurbita pepo subsp. pepo]4.2e-3498.73Show/hide
Query:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV
        MSSHPLQKTMSRARSRRIVLPPVQEHI+KIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV
Subjt:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV

TrEMBL top hitse value%identityAlignment
A0A0A0KCK7 Uncharacterized protein7.6e-3494.94Show/hide
Query:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV
        MSSHPLQKTMSRARSRRIVLPPVQEHI+KIEDV+D+GDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQ+
Subjt:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV

A0A5D3DM86 Golgi to ER traffic protein 4-like protein isoform X11.4e-3293.67Show/hide
Query:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV
        MSSHPLQKTMSRARSRRIVLPPVQEHI+KIEDV+D+GDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLK EQ+
Subjt:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV

A0A6J1H5V6 Golgi to ER traffic protein 4 homolog6.9e-35100Show/hide
Query:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV
        MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV
Subjt:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV

A0A6J1L0L9 Golgi to ER traffic protein 4 homolog isoform X22.0e-3498.73Show/hide
Query:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV
        MSSHPLQKTMSRARSRRIVLPPVQEHI+KIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV
Subjt:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV

A0A6J1L2N7 Golgi to ER traffic protein 4 homolog isoform X12.0e-3498.73Show/hide
Query:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV
        MSSHPLQKTMSRARSRRIVLPPVQEHI+KIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV
Subjt:  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQV

SwissProt top hitse value%identityAlignment
Q0P5I8 Golgi to ER traffic protein 4 homolog3.6e-0435.38Show/hide
Query:  KIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQVKASCIFSAYVIAGL
        K+   V+ GDYY A QMY+++  RY+A  +++EA +++ SGA     H Q  ++   S  V+  L
Subjt:  KIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQVKASCIFSAYVIAGL

Q5ZKG8 Golgi to ER traffic protein 4 homolog2.7e-0435.38Show/hide
Query:  KIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQVKASCIFSAYVIAGL
        K+   V+ GDYY A QMY+++  RY++  +Y EA +++ SGA     H Q  ++   S  V+  L
Subjt:  KIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQVKASCIFSAYVIAGL

Q6GKV1 Protein GET42.2e-1767.16Show/hide
Query:  MSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKH
        MSR R +R  LPPVQEHI K+  V++ G+YYGA QMYKS+SARYV A+R+SEALDIL SGAC +L+H
Subjt:  MSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKH

Q7L5D6 Golgi to ER traffic protein 4 homolog4.7e-0433.85Show/hide
Query:  KIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQVKASCIFSAYVIAGL
        K+   V+ GDYY A QMY+++  RY++  +++EA +++ SGA     H Q  ++   S  V+  L
Subjt:  KIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQVKASCIFSAYVIAGL

Q9D1H7 Golgi to ER traffic protein 4 homolog4.7e-0433.85Show/hide
Query:  KIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQVKASCIFSAYVIAGL
        K+   V+ GDYY A QMY+++  RY++  +++EA +++ SGA     H Q  ++   S  V+  L
Subjt:  KIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQVKASCIFSAYVIAGL

Arabidopsis top hitse value%identityAlignment
AT5G63220.1 unknown protein1.5e-1867.16Show/hide
Query:  MSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKH
        MSR R +R  LPPVQEHI K+  V++ G+YYGA QMYKS+SARYV A+R+SEALDIL SGAC +L+H
Subjt:  MSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCCCACCCGTTGCAGAAGACCATGTCCCGCGCGAGATCCAGGCGAATTGTGTTGCCTCCGGTTCAAGAGCATATTATGAAAATAGAAGACGTTGTCGACAGTGG
CGACTACTACGGTGCTCAACAGATGTACAAATCTGTCAGTGCAAGATACGTGGCTGCAGAAAGGTACTCAGAAGCCTTGGATATTCTTCAGTCAGGGGCTTGTACCCAGT
TGAAACATGAGCAGGTCAAAGCTAGTTGCATCTTTTCTGCGTATGTAATTGCTGGATTGAATGTTATTTTAGCATTTGCAGCACAGTGTATCCTTATTTTAAAATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTCCCACCCGTTGCAGAAGACCATGTCCCGCGCGAGATCCAGGCGAATTGTGTTGCCTCCGGTTCAAGAGCATATTATGAAAATAGAAGACGTTGTCGACAGTGG
CGACTACTACGGTGCTCAACAGATGTACAAATCTGTCAGTGCAAGATACGTGGCTGCAGAAAGGTACTCAGAAGCCTTGGATATTCTTCAGTCAGGGGCTTGTACCCAGT
TGAAACATGAGCAGGTCAAAGCTAGTTGCATCTTTTCTGCGTATGTAATTGCTGGATTGAATGTTATTTTAGCATTTGCAGCACAGTGTATCCTTATTTTAAAATTCTGA
Protein sequenceShow/hide protein sequence
MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQVKASCIFSAYVIAGLNVILAFAAQCILILKF