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Carg26725 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26725
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTrafficking protein particle complex subunit 2-like
Genome locationCarg_Chr02:7133..7726
RNA-Seq ExpressionCarg26725
SyntenyCarg26725
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005737 - cytoplasm (cellular component)
InterPro domainsIPR006722 - Trafficking protein particle complex subunit 2
IPR011012 - Longin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7034830.1 Trafficking protein particle complex subunit 2B [Cucurbita argyrosperma subsp. argyrosperma]1.0e-34100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL

KGN62236.1 hypothetical protein Csa_016951 [Cucumis sativus]3.0e-3498.73Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL
        MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL

XP_022947788.1 trafficking protein particle complex subunit 2 isoform X1 [Cucurbita moschata]6.7e-34100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH

XP_022947789.1 transport protein particle 20 kDa subunit isoform X2 [Cucurbita moschata]6.7e-34100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH

XP_022970900.1 trafficking protein particle complex subunit 2 isoform X1 [Cucurbita maxima]6.7e-34100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH

TrEMBL top hitse value%identityAlignment
A0A0A0LQF1 Uncharacterized protein1.5e-3498.73Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL
        MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL

A0A6J1G7K7 trafficking protein particle complex subunit 2 isoform X13.2e-34100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH

A0A6J1G7X4 transport protein particle 20 kDa subunit isoform X23.2e-34100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH

A0A6J1I1U1 transport protein particle 20 kDa subunit isoform X23.2e-34100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH

A0A6J1I468 trafficking protein particle complex subunit 2 isoform X13.2e-34100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH

SwissProt top hitse value%identityAlignment
E2QV03 Trafficking protein particle complex subunit 22.6e-1241.98Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTAGH+
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI

F1SRI0 Trafficking protein particle complex subunit 22.6e-1241.98Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTAGH+
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI

P0DI81 Trafficking protein particle complex subunit 22.6e-1241.98Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTAGH+
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI

P0DI82 Trafficking protein particle complex subunit 2B2.6e-1241.98Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTAGH+
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI

Q3T0F2 Trafficking protein particle complex subunit 22.6e-1241.98Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTAGH+
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHI

Arabidopsis top hitse value%identityAlignment
AT1G80500.1 SNARE-like superfamily protein3.8e-3590.91Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH
        MA TACFIIV RN+IPIYEAEVGSAAKRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+VDRFNDLVVSVYVTAGH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAACATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGCTAAAAGAGAGGATTCTGCTCAGCTGCATCAATT
TATATTGCACGCGTCCCTTGACATTGTTCAAGACCTGGCATGGACTACTAGTGCTATGTTCTTGAAAGCAGTCGATAGATTCAATGATCTGGTGGTGTCTGTTTATGTAA
CCGCTGGCCATATCCTTTAA
mRNA sequenceShow/hide mRNA sequence
CTCTCTCTCTCATCTTACACCGCCGGCAACTTCTCGAATTGCTTCTCTGCAATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAACATCCCTATTTATGAAGC
TGAAGTCGGATCTGCTGCTAAAAGAGAGGATTCTGCTCAGCTGCATCAATTTATATTGCACGCGTCCCTTGACATTGTTCAAGACCTGGCATGGACTACTAGTGCTATGT
TCTTGAAAGCAGTCGATAGATTCAATGATCTGGTGGTGTCTGTTTATGTAACCGCTGGCCATATCCTTTAATATCGAGGGGGGTTTTTCGGGAACAATGTGATG
Protein sequenceShow/hide protein sequence
MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL