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Carg26755 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26755
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein RIK isoform X1
Genome locationCarg_Chr14:8462482..8463516
RNA-Seq ExpressionCarg26755
SyntenyCarg26755
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581700.1 Protein RIK, partial [Cucurbita argyrosperma subsp. sororia]8.9e-44100Show/hide
Query:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
        MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
Subjt:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
KAG7018182.1 hypothetical protein SDJN02_20050, partial [Cucurbita argyrosperma subsp. argyrosperma]8.9e-44100Show/hide
Query:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
        MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
Subjt:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
XP_022955348.1 protein RIK isoform X1 [Cucurbita moschata]5.8e-4397.96Show/hide
Query:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
        MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKN++GGLASRKPFWAV
Subjt:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
XP_022980540.1 protein RIK isoform X1 [Cucurbita maxima]2.6e-4397.96Show/hide
Query:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
        MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPD+VSDTLVKLMEYGEEEDDDAEEGVESLNSKNT+GGLASRKPFWAV
Subjt:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
XP_023514657.1 protein RIK isoform X1 [Cucurbita pepo subsp. pepo]2.6e-4397.96Show/hide
Query:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
        MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPD+VSDTLVKLMEYGEEEDDDAEEGVESLNSKNT+GGLASRKPFWAV
Subjt:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
TrEMBL top hitse value%identityAlignment
A0A0A0KVP0 Uncharacterized protein6.9e-3484.69Show/hide
Query:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
        MPAPRKLVQ SSN M PP+PRSMPPPPTP KSTS VKVIVQDKELSLDTIK D+VSDTLVKLMEYG  EDDD+EEGVESLNS NT+GG+A+RKPFWAV
Subjt:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
A0A5A7VGN4 Protein RIK isoform X14.2e-3181.63Show/hide
Query:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
        MPAPRKLV   SN M PPRPRSMPPPPTPVK TSTVKVI+QDKELS DTIK D++SDTLVKLMEYG EEDDD+EEGVESLNS NT+G +A RKPFWAV
Subjt:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
A0A5D3DVD0 Protein RIK isoform X14.2e-3181.63Show/hide
Query:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
        MPAPRKLV   SN M PPRPRSMPPPPTPVK TSTVKVI+QDKELS DTIK D++SDTLVKLMEYG EEDDD+EEGVESLNS NT+G +A RKPFWAV
Subjt:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
A0A6J1GTP6 protein RIK isoform X12.8e-4397.96Show/hide
Query:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
        MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKN++GGLASRKPFWAV
Subjt:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
A0A6J1IWQ3 protein RIK isoform X11.3e-4397.96Show/hide
Query:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
        MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPD+VSDTLVKLMEYGEEEDDDAEEGVESLNSKNT+GGLASRKPFWAV
Subjt:  MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV
SwissProt top hitse value%identityAlignment
Q9LIA4 Protein RIK8.4e-0541.98Show/hide
Query:  PAPRKLVQPSSNEM---PPPRPRSMPP-------PPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDD
        P P K + P S++    PPPR ++M P       PP P  + +T +  +QD  +S+   KP+ V DTL+KLMEYG++EDDD
Subjt:  PAPRKLVQPSSNEM---PPPRPRSMPP-------PPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDD
Arabidopsis top hitse value%identityAlignment
AT3G29390.1 RS2-interacting KH protein6.0e-0641.98Show/hide
Query:  PAPRKLVQPSSNEM---PPPRPRSMPP-------PPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDD
        P P K + P S++    PPPR ++M P       PP P  + +T +  +QD  +S+   KP+ V DTL+KLMEYG++EDDD
Subjt:  PAPRKLVQPSSNEM---PPPRPRSMPP-------PPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGCTCCTAGGAAGCTAGTTCAGCCTTCATCCAATGAAATGCCACCACCTCGGCCCCGATCCATGCCACCTCCACCCACACCAGTAAAGTCTACATCAACAGTTAA
GGTTATAGTGCAAGATAAGGAACTATCGTTGGACACAATAAAACCTGATATTGTCTCAGATACATTAGTCAAGCTAATGGAATATGGAGAAGAAGAAGATGATGATGCAG
AGGAAGGCGTTGAATCATTGAACAGCAAGAACACCTCTGGTGGCTTGGCAAGTCGAAAACCTTTCTGGGCTGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTGCTCCTAGGAAGCTAGTTCAGCCTTCATCCAATGAAATGCCACCACCTCGGCCCCGATCCATGCCACCTCCACCCACACCAGTAAAGTCTACATCAACAGTTAA
GGTTATAGTGCAAGATAAGGAACTATCGTTGGACACAATAAAACCTGATATTGTCTCAGATACATTAGTCAAGCTAATGGAATATGGAGAAGAAGAAGATGATGATGCAG
AGGAAGGCGTTGAATCATTGAACAGCAAGAACACCTCTGGTGGCTTGGCAAGTCGAAAACCTTTCTGGGCTGTGTAGAAGTTAAAATGGCGTTCATTAGTGAGAACATTT
TCATCATCTCCTATATACTTTTGGACTAAGACGTGCTGTCGACGCGTTTCAACCTCTCATGCAACATGATTATGCAGTGGGGGATTATTTGTTTTGATGAAGTGTCGAAG
TGGTCATGGGTCATGTTAGAAATTGTTGTAAATTGGTAGTTTCCCCATACTAGGGTTGAAGTTGCAATGGAAAGATACTACTTTGTAAGCTTACAACATTCGTTGATCAC
GTATAATGCTCGAAGTTCGACTGCTATATTTCCCGAGCGATTAAGCAGCAGCCCGGAATGAAGGTGGGGAAGAAATTTTGAATGCATTTAGCAGCATACACACAAAACAG
AAGCAAAGCAGTGTGCATTTAAAATAAATGTTTCAGCTTTCTTAAGTGCATGAAGAAGATTGTATATGTCGCTCTTGCTCACTGCATAACAGATCTCTGTTCAGATCTGA
ACTTAGAAACACTTGATTAATTTTGAATTTTGTTTAACTTTAATTTCAATTTTTTTTAGTACTTTTAAAAACACTTTTAACTTTATTTCA
Protein sequenceShow/hide protein sequence
MPAPRKLVQPSSNEMPPPRPRSMPPPPTPVKSTSTVKVIVQDKELSLDTIKPDIVSDTLVKLMEYGEEEDDDAEEGVESLNSKNTSGGLASRKPFWAV