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Carg26789 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26789
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein CASPARIAN STRIP INTEGRITY FACTOR 1-like
Genome locationCarg_Chr20:4132196..4133407
RNA-Seq ExpressionCarg26789
SyntenyCarg26789
Gene Ontology termsGO:0010039 - response to iron ion (biological process)
GO:0010447 - response to acidic pH (biological process)
GO:0055072 - iron ion homeostasis (biological process)
GO:2000067 - regulation of root morphogenesis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0048226 - Casparian strip (cellular component)
InterPro domainsIPR038974 - Protein Casparian strip integrity factor 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010912.1 Protein CASPARIAN STRIP INTEGRITY FACTOR 1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-35100Show/hide
Query:  MLFPTAKENLICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        MLFPTAKENLICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
Subjt:  MLFPTAKENLICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
XP_022944149.1 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like [Cucurbita moschata]6.8e-2886.49Show/hide
Query:  LFPTAKENLICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        L  T+  + IC+  RPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
Subjt:  LFPTAKENLICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
XP_022986650.1 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like [Cucurbita maxima]2.3e-2885.33Show/hide
Query:  MLFPTAKENLICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        +L  T+  + IC+  RPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
Subjt:  MLFPTAKENLICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
XP_023511856.1 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like [Cucurbita pepo subsp. pepo]7.5e-2793.85Show/hide
Query:  ICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        IC+   PSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
Subjt:  ICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
XP_038902215.1 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like [Benincasa hispida]3.6e-2171.43Show/hide
Query:  MLFPTAKENLICMRSRPSKLVHEVV--NGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        +L  T+  + IC+  RPSKLV EVV   GVVHE  KR TR EMED+HERLLRVNTKDYGRYDP+P+FVKPPFKLIPN
Subjt:  MLFPTAKENLICMRSRPSKLVHEVV--NGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
TrEMBL top hitse value%identityAlignment
A0A0A0LJ22 Uncharacterized protein7.4e-2070.51Show/hide
Query:  MLFPTAKENLICMRSRPSKLVHEVV--NGVVHEGRKRTTRDEMED-VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        +L  T+  + IC+  RPSKLV EVV   GVVHE  KR TR EME+ +HERLLRVNTKDYGRYDPSP+FVKPPFKLIPN
Subjt:  MLFPTAKENLICMRSRPSKLVHEVV--NGVVHEGRKRTTRDEMED-VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
A0A1S3CEV9 uncharacterized protein LOC1034996982.1e-1970.89Show/hide
Query:  MLFPTAKENLICMRSRPSKLVHEVV--NGVVHEGRKRTTR-DEMED-VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        +L  T+  + IC+  RPSKLV EVV   GVVHE  KR TR DEMED +HERLLRVNTKDYGRYDP+P+FVKPPFKLIPN
Subjt:  MLFPTAKENLICMRSRPSKLVHEVV--NGVVHEGRKRTTR-DEMED-VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
A0A5A7TUS0 Uncharacterized protein2.1e-1970.89Show/hide
Query:  MLFPTAKENLICMRSRPSKLVHEVV--NGVVHEGRKRTTR-DEMED-VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        +L  T+  + IC+  RPSKLV EVV   GVVHE  KR TR DEMED +HERLLRVNTKDYGRYDP+P+FVKPPFKLIPN
Subjt:  MLFPTAKENLICMRSRPSKLVHEVV--NGVVHEGRKRTTR-DEMED-VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
A0A6J1FW62 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like3.3e-2886.49Show/hide
Query:  LFPTAKENLICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        L  T+  + IC+  RPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
Subjt:  LFPTAKENLICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
A0A6J1JEM0 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like1.1e-2885.33Show/hide
Query:  MLFPTAKENLICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        +L  T+  + IC+  RPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
Subjt:  MLFPTAKENLICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
SwissProt top hitse value%identityAlignment
O65684 Protein CASPARIAN STRIP INTEGRITY FACTOR 24.0e-0738.27Show/hide
Query:  LFPTAKENLICMRSRPSKLVH-------EVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        L  +A    +C   R S L++       EVV   +HE             HER+LR+N++DYG   P P  V+PPFKLIPN
Subjt:  LFPTAKENLICMRSRPSKLVH-------EVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
Q84MD2 Protein CASPARIAN STRIP INTEGRITY FACTOR 13.7e-0846.38Show/hide
Query:  ICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMED----VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        +    RPS  VH+ +N           R+EM +     HERLLR+NTKDYG   PSP   +PPFKLIPN
Subjt:  ICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMED----VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
Arabidopsis top hitse value%identityAlignment
AT2G16385.1 unknown protein2.6e-0946.38Show/hide
Query:  ICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMED----VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        +    RPS  VH+ +N           R+EM +     HERLLR+NTKDYG   PSP   +PPFKLIPN
Subjt:  ICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMED----VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
AT4G34600.1 unknown protein2.9e-0838.27Show/hide
Query:  LFPTAKENLICMRSRPSKLVH-------EVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        L  +A    +C   R S L++       EVV   +HE             HER+LR+N++DYG   P P  V+PPFKLIPN
Subjt:  LFPTAKENLICMRSRPSKLVH-------EVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTTTCCGACAGCTAAAGAGAATCTTATTTGCATGCGTAGTCGACCTTCTAAGCTGGTTCATGAGGTTGTTAATGGTGTTGTGCATGAGGGTCGAAAGAGGACGAC
ACGAGATGAAATGGAGGACGTCCATGAAAGGCTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCATCTCCATCTTTTGTGAAGCCTCCTTTCAAGCTCATCC
CCAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTTTCCGACAGCTAAAGAGAATCTTATTTGCATGCGTAGTCGACCTTCTAAGCTGGTTCATGAGGTTGTTAATGGTGTTGTGCATGAGGGTCGAAAGAGGACGAC
ACGAGATGAAATGGAGGACGTCCATGAAAGGCTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCATCTCCATCTTTTGTGAAGCCTCCTTTCAAGCTCATCC
CCAACTAA
Protein sequenceShow/hide protein sequence
MLFPTAKENLICMRSRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN