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Carg26905 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26905
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSerine/arginine-rich splicing factor RS2Z32
Genome locationCarg_Chr04:7632558..7633121
RNA-Seq ExpressionCarg26905
SyntenyCarg26905
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1218008.1 Serine/arginine-rich splicing factor RS2Z32 [Morella rubra]1.2e-1280Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRHLPSPFLGSTTVNV
        MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR LP+  +    VN+
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRHLPSPFLGSTTVNV
KAG6669979.1 hypothetical protein CIPAW_01G279300 [Carya illinoinensis]1.3e-1197.37Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRHL
        MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR L
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRHL
KAG7031834.1 Serine/arginine-rich splicing factor RS2Z32, partial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-43100Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRHLPSPFLGSTTVNVYFDISVKVWIVDGSVWFNLSDLVEGFLAYAKPGGLW
        MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRHLPSPFLGSTTVNVYFDISVKVWIVDGSVWFNLSDLVEGFLAYAKPGGLW
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRHLPSPFLGSTTVNVYFDISVKVWIVDGSVWFNLSDLVEGFLAYAKPGGLW
TQD83474.1 hypothetical protein C1H46_030980 [Malus baccata]7.9e-1254.02Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRHLPSPFLGSTTVNVYFDISVKVWIVDGSVWFNLSDLVEGFLA-YAKPGGLW
        MPRYDDRYG TRLYVGRLSSRTRSRDL+ LF+RYG                   S+ V       + NL+DLVEGFL   A  GGLW
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRHLPSPFLGSTTVNVYFDISVKVWIVDGSVWFNLSDLVEGFLA-YAKPGGLW
XP_022993126.1 serine/arginine-rich splicing factor RS2Z32-like isoform X3 [Cucurbita maxima]3.0e-11100Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
        MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
TrEMBL top hitse value%identityAlignment
A0A0D3G2M3 Uncharacterized protein7.7e-1355.56Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRHLPSPFLGSTTVNV-YFDISVKVWIV-DGSVWFNLSDLVEGFLAY
        MPRYDDRYG TRLYVGRLSSRTRSRDL+  FSRYG +    FL +    + Y+ +   V +   GS  F+L+DLVEGF  +
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRHLPSPFLGSTTVNV-YFDISVKVWIV-DGSVWFNLSDLVEGFLAY
A0A1S3BDJ7 serine/arginine-rich splicing factor RS2Z32-like isoform X21.4e-11100Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
        MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
A0A540LAG4 Uncharacterized protein3.8e-1254.02Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRHLPSPFLGSTTVNVYFDISVKVWIVDGSVWFNLSDLVEGFLA-YAKPGGLW
        MPRYDDRYG TRLYVGRLSSRTRSRDL+ LF+RYG                   S+ V       + NL+DLVEGFL   A  GGLW
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRHLPSPFLGSTTVNVYFDISVKVWIVDGSVWFNLSDLVEGFLA-YAKPGGLW
A0A6A1W2L3 Serine/arginine-rich splicing factor RS2Z325.9e-1380Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRHLPSPFLGSTTVNV
        MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR LP+  +    VN+
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRHLPSPFLGSTTVNV
A0A6J1JYX0 serine/arginine-rich splicing factor RS2Z32-like isoform X11.4e-11100Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
        MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
SwissProt top hitse value%identityAlignment
Q8VYA5 Serine/arginine-rich splicing factor RS2Z331.1e-1188.89Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LFSRYGR
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
Q9FYB7 Serine/arginine-rich splicing factor RS2Z321.1e-1188.89Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LFSRYGR
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
Arabidopsis top hitse value%identityAlignment
AT2G37340.1 arginine/serine-rich zinc knuckle-containing protein 337.6e-1388.89Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LFSRYGR
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
AT3G53500.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain7.6e-1388.89Show/hide
Query:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR
        MPRYDDRYG TRLYVGRLSSRTR+RDL+ LFSRYGR
Subjt:  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAGGTACGACGATCGTTACGGTGGTACTCGGCTCTACGTTGGGCGCCTGTCTTCACGGACGAGGTCCCGTGATCTGGATGACTTGTTCAGTCGTTATGGAAGGCA
TTTACCAAGCCCTTTTTTGGGGAGCACGACTGTAAATGTGTATTTTGATATATCCGTGAAAGTGTGGATTGTTGATGGGTCTGTGTGGTTTAACTTGAGTGATCTTGTTG
AAGGTTTTTTGGCTTATGCCAAACCTGGAGGTCTATGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAGGTACGACGATCGTTACGGTGGTACTCGGCTCTACGTTGGGCGCCTGTCTTCACGGACGAGGTCCCGTGATCTGGATGACTTGTTCAGTCGTTATGGAAGGCA
TTTACCAAGCCCTTTTTTGGGGAGCACGACTGTAAATGTGTATTTTGATATATCCGTGAAAGTGTGGATTGTTGATGGGTCTGTGTGGTTTAACTTGAGTGATCTTGTTG
AAGGTTTTTTGGCTTATGCCAAACCTGGAGGTCTATGGTGA
Protein sequenceShow/hide protein sequence
MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRHLPSPFLGSTTVNVYFDISVKVWIVDGSVWFNLSDLVEGFLAYAKPGGLW