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Carg26935 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26935
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein .
Genome locationCarg_Chr12:6648756..6651288
RNA-Seq ExpressionCarg26935
SyntenyCarg26935
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8009525.1 hypothetical protein BT93_J0510 [Corymbia citriodora subsp. variegata]2.9e-1559.41Show/hide
Query:  MAASVALRSSCLRAISRISTGSAARNVS---VSSVLPSVRSSFVSRRISIS-PHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSP
        MAASVA RS+ LRAISR +  +A+  +     +S  PS+R +F   R  IS P S RL+RRELSSL P+HSAIASACLVS+LP+E ++SV+GRF NYLSP
Subjt:  MAASVALRSSCLRAISRISTGSAARNVS---VSSVLPSVRSSFVSRRISIS-PHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSP

Query:  I
        I
Subjt:  I
XP_022152888.1 uncharacterized protein LOC111020511 [Momordica charantia]7.0e-3390.72Show/hide
Query:  AASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISP-HSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
        +ASVALRSSCLRAI RIST SAARNVSVSSVLPS+RSSFV RR SISP HSLRLLRRELSSLRP+HSAIASACLVSELPAEASASV+GRFVNYLSPI
Subjt:  AASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISP-HSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
XP_022937479.1 uncharacterized protein LOC111443881 [Cucurbita moschata]1.9e-38100Show/hide
Query:  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
        MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
Subjt:  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
XP_022969556.1 uncharacterized protein LOC111468540 [Cucurbita maxima]6.1e-3796.91Show/hide
Query:  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
        MAASVALRSSCLRAISRIST S+ARNVSVSS LPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
Subjt:  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
XP_030957939.1 uncharacterized protein LOC115979952 [Quercus lobata]5.0e-1561.62Show/hide
Query:  MAASVALRSSCLRAISR--ISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
        MAASVA RS+ +RA  R  +S  SA R  S    LP   S+FV  R   S   LRLLRRELSSL+P+HSAIASACLVS+LP+EAS S +GRF NYLSPI
Subjt:  MAASVALRSSCLRAISR--ISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
TrEMBL top hitse value%identityAlignment
A0A2I4GXL8 uncharacterized protein LOC1090117742.1e-1459Show/hide
Query:  MAASVAL-RSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPH--SLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
        MAAS+A+ RS+ +RA+ R S  S   + +    +P   S+FV RR   SPH  S RL+RRELSSL PIHSAIASACLVS+LP+EAS S +GRFV+YLSPI
Subjt:  MAASVAL-RSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPH--SLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
A0A6A3CJ95 Uncharacterized protein1.2e-1454.08Show/hide
Query:  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSL-RLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
        MAA++A RSS LR + R +T +    +  S   PS+RS+F   +   SP SL RL+RRELS+L+PIHSA+ASACLVS+LP +A++  +GRF NYLSPI
Subjt:  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSL-RLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
A0A6J1DG34 uncharacterized protein LOC1110205113.4e-3390.72Show/hide
Query:  AASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISP-HSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
        +ASVALRSSCLRAI RIST SAARNVSVSSVLPS+RSSFV RR SISP HSLRLLRRELSSLRP+HSAIASACLVSELPAEASASV+GRFVNYLSPI
Subjt:  AASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISP-HSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
A0A6J1FBA6 uncharacterized protein LOC1114438819.2e-39100Show/hide
Query:  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
        MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
Subjt:  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
A0A6J1HY48 uncharacterized protein LOC1114685403.0e-3796.91Show/hide
Query:  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
        MAASVALRSSCLRAISRIST S+ARNVSVSS LPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
Subjt:  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G27775.1 FUNCTIONS IN: molecular_function unknown5.2e-1048.04Show/hide
Query:  AASVALRSSC-LRAISRISTGSAARNVSVSSVLPSV-RSSFVSRRISISPH----SLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLS
        A  +A RS+  +R+I+R +T   ARN+  S   PSV   +F S R + S        RLLRRELS+ +P HS IA+ACLVS+LP++ + S +GRF NYLS
Subjt:  AASVALRSSC-LRAISRISTGSAARNVSVSSVLPSV-RSSFVSRRISISPH----SLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLS

Query:  PI
        PI
Subjt:  PI
AT2G27775.2 FUNCTIONS IN: molecular_function unknown3.8e-0543.82Show/hide
Query:  AASVALRSSC-LRAISRISTGSAARNVSVSSVLPSV-RSSFVSRRISISPH----SLRLLRRELSSLRPIHSAIASACLVSELPAEASA
        A  +A RS+  +R+I+R +T   ARN+  S   PSV   +F S R + S        RLLRRELS+ +P HS IA+ACLVS+LP++ ++
Subjt:  AASVALRSSC-LRAISRISTGSAARNVSVSSVLPSV-RSSFVSRRISISPH----SLRLLRRELSSLRPIHSAIASACLVSELPAEASA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATATCCACCGGTTCCGCCGCTAGAAATGTTTCCGTTTCATCGGTGCTTCCTTCGGTGCG
CTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGTTGCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCC
TTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTAGATTTGTGAACTATCTGAGCCCTATCTAG
mRNA sequenceShow/hide mRNA sequence
TGACGGGGGATTTTGGGGAGGTTTTAGGGTTCGTAGTTCACAGAATTCAATCGGGAATGGCAGCTTCAGTTGCGCTCAGATCGTCGTGTCTTCGAGCAATTTCTAGAATA
TCCACCGGTTCCGCCGCTAGAAATGTTTCCGTTTCATCGGTGCTTCCTTCGGTGCGCTCAAGTTTCGTATCTCGAAGAATTTCAATCTCCCCTCACTCTCTAAGGTTGTT
GCGACGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCTAGCGCCTCCGTACAAGGTAGATTTGTGA
ACTATCTGAGCCCTATCTAGCACCAAATGCTTATAGAAAATGAGCAGTTTCCTTCTTGTGTATTAGATTGCCAGCATCATCACTTCATAACGTCTTTAGCTGTTGAGTAT
GAAGACATGGTTTCTTTGGTTCCTCTAGTTGATTTTACTCGATTAAGTATATTTATGTTACATCAAGCAGCCATTTTTGGTATAACTTAGTAGGCCTCGTTTTATCATTG
TGTTGTTCTAAACACCGGGTGATTACCCCCATAATTGATCAGATTTCCTTCCAGGCTAGTGATACAACTATTTTCAGATAGAGACTGGCTTAATTTCAAAGTTAGAA
Protein sequenceShow/hide protein sequence
MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELSSLRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI