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Carg26948 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26948
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionarabinogalactan peptide 13-like
Genome locationCarg_Chr11:3667575..3667754
RNA-Seq ExpressionCarg26948
SyntenyCarg26948
Gene Ontology termsGO:0031225 - anchored component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022018.1 Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-17100Show/hide
Query:  MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL
        MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL
Subjt:  MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL
KAG7023913.1 Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-1183.05Show/hide
Query:  MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL
        M AMKF+ALM+AMVV  MA SS+IVAAQEAPAPSPASDA LSLPTLMASLAPL L FFL
Subjt:  MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL
XP_011660059.1 arabinogalactan protein 13 [Cucumis sativus]2.6e-0666.67Show/hide
Query:  AAMKFEALMVAMVVAVM---AFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFF
        AA +F+ LMV M+V V+   + SS+IVAAQEAPAPSPASDA LS+PTLMAS  PLV  FF
Subjt:  AAMKFEALMVAMVVAVM---AFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFF
XP_022988237.1 arabinogalactan peptide 13-like [Cucurbita maxima]1.4e-1284.75Show/hide
Query:  MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL
        M AMKF+ALM+AMVV  MA SS+IVAAQEAPAPSPASDAPLSLPTLMASLAPL L FFL
Subjt:  MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL
XP_038879727.1 arabinogalactan protein 13-like [Benincasa hispida]1.1e-0981.97Show/hide
Query:  MAAMKFEAL-MVAMVVAVMAF-SSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL
        M AMK +AL M+ MVV +MAF SSSIVAAQEAPAPSPASDAP+SLPTLMASLAPLVL FFL
Subjt:  MAAMKFEAL-MVAMVVAVMAF-SSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL
TrEMBL top hitse value%identityAlignment
A0A0A0LWU9 Uncharacterized protein1.3e-0666.67Show/hide
Query:  AAMKFEALMVAMVVAVM---AFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFF
        AA +F+ LMV M+V V+   + SS+IVAAQEAPAPSPASDA LS+PTLMAS  PLV  FF
Subjt:  AAMKFEALMVAMVVAVM---AFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFF
A0A6J1JCI6 arabinogalactan peptide 13-like6.9e-1384.75Show/hide
Query:  MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL
        M AMKF+ALM+AMVV  MA SS+IVAAQEAPAPSPASDAPLSLPTLMASLAPL L FFL
Subjt:  MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G26320.1 arabinogalactan protein 137.5e-0455.17Show/hide
Query:  MAAMKFEALMVAMVVAVMAFSS-SIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPF
        M AMK   L VA++VA MAFS+    AA EAPAPSP SDA L++P   AS+A L   F
Subjt:  MAAMKFEALMVAMVVAVMAFSS-SIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCATGAAGTTTGAAGCTTTGATGGTGGCAATGGTGGTGGCTGTCATGGCCTTCTCCTCCTCCATTGTTGCAGCTCAAGAAGCTCCGGCGCCAAGCCCTGCCTC
TGATGCTCCACTGTCCCTCCCAACTTTAATGGCTTCTCTTGCTCCTCTTGTTCTTCCCTTCTTCCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCCATGAAGTTTGAAGCTTTGATGGTGGCAATGGTGGTGGCTGTCATGGCCTTCTCCTCCTCCATTGTTGCAGCTCAAGAAGCTCCGGCGCCAAGCCCTGCCTC
TGATGCTCCACTGTCCCTCCCAACTTTAATGGCTTCTCTTGCTCCTCTTGTTCTTCCCTTCTTCCTCTGA
Protein sequenceShow/hide protein sequence
MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL