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Carg26957 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26957
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description28S ribosomal protein S29 mitochondrial
Genome locationCarg_Chr13:90655..93603
RNA-Seq ExpressionCarg26957
SyntenyCarg26957
Gene Ontology termsGO:0005763 - mitochondrial small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4282094.1 unnamed protein product [Prunus armeniaca]2.4e-1282.69Show/hide
Query:  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
        HTHAAVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Subjt:  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
KAG6583329.1 hypothetical protein SDJN03_19261, partial [Cucurbita argyrosperma subsp. sororia]5.7e-14100Show/hide
Query:  VVRLLVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPIRC
        VVRLLVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPIRC
Subjt:  VVRLLVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPIRC
KAG7019102.1 hypothetical protein SDJN02_18060, partial [Cucurbita argyrosperma subsp. argyrosperma]7.9e-64100Show/hide
Query:  GISPANMVVHVQGLRLTENHGATDRNLVFRMRTKTTKSTVKKGKSKADAKAANDPSASAAASNELDAALSDDDPSFDVGTYAHTHAAVGVVVRLLVKDIP
        GISPANMVVHVQGLRLTENHGATDRNLVFRMRTKTTKSTVKKGKSKADAKAANDPSASAAASNELDAALSDDDPSFDVGTYAHTHAAVGVVVRLLVKDIP
Subjt:  GISPANMVVHVQGLRLTENHGATDRNLVFRMRTKTTKSTVKKGKSKADAKAANDPSASAAASNELDAALSDDDPSFDVGTYAHTHAAVGVVVRLLVKDIP

Query:  VLIAIDQNDKWFTFSEYEEPVTVRSTPPIRC
        VLIAIDQNDKWFTFSEYEEPVTVRSTPPIRC
Subjt:  VLIAIDQNDKWFTFSEYEEPVTVRSTPPIRC
PQP98533.1 28S ribosomal protein S29 mitochondrial [Prunus yedoensis var. nudiflora]1.1e-1268.12Show/hide
Query:  ALSDDDPSFDV--GTYAHTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
        A+ DD   +D+      HTHAAVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Subjt:  ALSDDDPSFDV--GTYAHTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
XP_008457304.1 PREDICTED: 28S ribosomal protein S29, mitochondrial [Cucumis melo]2.4e-1282.69Show/hide
Query:  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
        HTHAAVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Subjt:  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
TrEMBL top hitse value%identityAlignment
A0A314Y3T6 28S ribosomal protein S29 mitochondrial5.2e-1368.12Show/hide
Query:  ALSDDDPSFDV--GTYAHTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
        A+ DD   +D+      HTHAAVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Subjt:  ALSDDDPSFDV--GTYAHTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
A0A314Z5I4 28S ribosomal protein S29 mitochondrial1.2e-1282.69Show/hide
Query:  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
        HTHAAVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Subjt:  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
A0A4Y1R9K3 Mitochondrial 28S ribosomal protein S29-related protein1.2e-1282.69Show/hide
Query:  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
        HTHAAVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Subjt:  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
A0A5A7UZA8 28S ribosomal protein S291.2e-1282.69Show/hide
Query:  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
        HTHAAVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Subjt:  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
A0A5E4ERI7 PREDICTED: 28S ribosomal1.2e-1282.69Show/hide
Query:  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
        HTHAAVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Subjt:  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G16870.1 mitochondrial 28S ribosomal protein S29-related7.5e-1268.63Show/hide
Query:  THAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI
        THAAV VVVRL     +VKD+PVLI IDQ + WFTFSE+EEPVT RS  PI
Subjt:  THAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTATATCGCCCGCTAACATGGTGGTTCACGTTCAGGGCCTTCGGCTTACAGAGAATCACGGAGCAACGGACAGAAATCTGGTTTTCCGAATGCGCACTAAGACCACCAA
ATCCACCGTTAAGAAGGGCAAGTCCAAGGCCGACGCTAAAGCCGCCAATGATCCCTCCGCCTCCGCTGCTGCTTCAAACGAACTAGATGCGGCGCTTTCTGATGATGATC
CCTCATTCGATGTTGGCACATATGCACACACTCATGCGGCTGTTGGGGTGGTAGTTCGTTTACTTGTGAAAGATATTCCTGTGCTCATTGCTATTGATCAAAATGACAAG
TGGTTTACGTTCAGTGAGTATGAAGAACCAGTGACTGTTCGTTCTACTCCGCCAATACGTTGCTAG
mRNA sequenceShow/hide mRNA sequence
GGTATATCGCCCGCTAACATGGTGGTTCACGTTCAGGGCCTTCGGCTTACAGAGAATCACGGAGCAACGGACAGAAATCTGGTTTTCCGAATGCGCACTAAGACCACCAA
ATCCACCGTTAAGAAGGGCAAGTCCAAGGCCGACGCTAAAGCCGCCAATGATCCCTCCGCCTCCGCTGCTGCTTCAAACGAACTAGATGCGGCGCTTTCTGATGATGATC
CCTCATTCGATGTTGGCACATATGCACACACTCATGCGGCTGTTGGGGTGGTAGTTCGTTTACTTGTGAAAGATATTCCTGTGCTCATTGCTATTGATCAAAATGACAAG
TGGTTTACGTTCAGTGAGTATGAAGAACCAGTGACTGTTCGTTCTACTCCGCCAATACGTTGCTAGAGAACTTGCAATGGTAAAAGCTTTTATTTTAGGTCTATGATGCA
GGATGGCATGATGGTTGGTGCTTTATCCCATTCAACTGCTGTAGGAAAGTTGCTTCAAGACTTGCCAGATGTTCCTCTAGGTGCACGTGTTAATTTCCCTTGCTATAGTC
TAGATGAAGCGGCTTCTGTTTTCCAATTTCCAGTACTACCACAGGTATGCTTATATTGTTGTTATTTTGTTTGGTGAAGGATTTAGATTATGCCCCAATTTGGATATTAG
AGGAAATAAGAGTTTTAAGGAGTTAGCTGTCTTAACGTT
Protein sequenceShow/hide protein sequence
GISPANMVVHVQGLRLTENHGATDRNLVFRMRTKTTKSTVKKGKSKADAKAANDPSASAAASNELDAALSDDDPSFDVGTYAHTHAAVGVVVRLLVKDIPVLIAIDQNDK
WFTFSEYEEPVTVRSTPPIRC