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Carg26993 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26993
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionclassical arabinogalactan protein 9-like
Genome locationCarg_Chr11:9018114..9018995
RNA-Seq ExpressionCarg26993
SyntenyCarg26993
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
InterPro domainsIPR044981 - Lysine-rich arabinogalactan protein AGP9/17/18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022486.1 hypothetical protein SDJN02_16217, partial [Cucurbita argyrosperma subsp. argyrosperma]6.2e-69100Show/hide
Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV
        MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV

Query:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG
        PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG
Subjt:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG

XP_022927816.1 classical arabinogalactan protein 9 isoform X1 [Cucurbita moschata]8.7e-6394.12Show/hide
Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV
        MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVS+PPP+     SPPPA+PPPATPPPAPLASPPAAV
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV

Query:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG
        PAPAP KKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEET VGRMAMIGMGYVFMMVLG
Subjt:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG

XP_022927817.1 classical arabinogalactan protein 9 isoform X2 [Cucurbita moschata]5.8e-5989.41Show/hide
Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV
        MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVS               +PPPATPPPAPLASPPAAV
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV

Query:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG
        PAPAP KKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEET VGRMAMIGMGYVFMMVLG
Subjt:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG

XP_022927818.1 classical arabinogalactan protein 9 isoform X3 [Cucurbita moschata]2.2e-5093.2Show/hide
Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV
        MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVS+PPP+     SPPPA+PPPATPPPAPLASPPAAV
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV

Query:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSG
        PAPAP KKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN G
Subjt:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSG

XP_022988984.1 classical arabinogalactan protein 9 isoform X1 [Cucurbita maxima]4.3e-5485.88Show/hide
Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV
        MMDPQALLCFTFI I FAGAGAQSPSTPPTATPPPVS+PPP       + PPPVS+PPPATPPPV     S PPPASPPPATPPPATPPPAPLASPPAAV
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV

Query:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG
        PAPAP KKKSKAAS+PSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGA ETMVGRM M+GMGYVFMMVLG
Subjt:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG

TrEMBL top hitse value%identityAlignment
A0A6J1EI95 classical arabinogalactan protein 9 isoform X22.8e-5989.41Show/hide
Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV
        MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVS               +PPPATPPPAPLASPPAAV
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV

Query:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG
        PAPAP KKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEET VGRMAMIGMGYVFMMVLG
Subjt:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG

A0A6J1EIM1 classical arabinogalactan protein 9 isoform X14.2e-6394.12Show/hide
Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV
        MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVS+PPP+     SPPPA+PPPATPPPAPLASPPAAV
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV

Query:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG
        PAPAP KKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEET VGRMAMIGMGYVFMMVLG
Subjt:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG

A0A6J1EM34 classical arabinogalactan protein 9 isoform X31.1e-5093.2Show/hide
Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV
        MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVS+PPP+     SPPPA+PPPATPPPAPLASPPAAV
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV

Query:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSG
        PAPAP KKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDN G
Subjt:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSG

A0A6J1JL42 classical arabinogalactan protein 9 isoform X28.2e-4385.03Show/hide
Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV
        MMDPQALLCFTFI I FAGAGAQSPSTPPTATPPPVS+PPP       + PPPVS+PPPATPPPV     S PPPASPPPATPPPATPPPAPLASPPAAV
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV

Query:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSG
        PAPAP KKKSKAAS+PSPLSSPPAPSAEAPVPTSSDSPTPSQNDN G
Subjt:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSG

A0A6J1JN37 classical arabinogalactan protein 9 isoform X12.1e-5485.88Show/hide
Query:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV
        MMDPQALLCFTFI I FAGAGAQSPSTPPTATPPPVS+PPP       + PPPVS+PPPATPPPV     S PPPASPPPATPPPATPPPAPLASPPAAV
Subjt:  MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAV

Query:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG
        PAPAP KKKSKAAS+PSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGA ETMVGRM M+GMGYVFMMVLG
Subjt:  PAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG

SwissProt top hitse value%identityAlignment
Q9C5S0 Classical arabinogalactan protein 98.3e-1653.76Show/hide
Query:  ICIA-FAGAGAQSPSTPPT--------------ATPPPVSAPPPV--------SAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPP--ASPPPATPPP-A
        ICI   AG   Q+P++PPT              ATPPPVSAPPPV        +APPP + PPPVS+PPPA+PPP + PP ++PPP  ASPPPATPPP A
Subjt:  ICIA-FAGAGAQSPSTPPT--------------ATPPPVSAPPPV--------SAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPP--ASPPPATPPP-A

Query:  TPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLSSPPAPSAEAPVP-TSSDSPTPSQ---NDNSGAEETMVGRMAMIGMGYVFMMV
        TPPPAPLASPPA VPAPAP  K    + +PSP SSPP PS++AP P T S SP PS    ND +GA + MV  + + G   V+ M+
Subjt:  TPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLSSPPAPSAEAPVP-TSSDSPTPSQ---NDNSGAEETMVGRMAMIGMGYVFMMV

Q9FPR2 Lysine-rich arabinogalactan protein 189.5e-0443.88Show/hide
Query:  MDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAP-------PPVSAP-------PPVSAPPPVSAP----------PPATPPPVSAPP---PSTPP
        MD   LL  T ICI  AG G QSP + PT +P   SAP       P V++P       P  SA  PV +P          PP TP P S+PP   P    
Subjt:  MDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAP-------PPVSAP-------PPVSAPPPVSAP----------PPATPPPVSAPP---PSTPP

Query:  PASPPPATPPPATPPPAPLASPPAAVPAPAPRK--------KKSKAASAPSP-LSSPPAPSAEAPVPTS-SDSPTPSQNDNSGAEETMVGRMAMIG
        P S PP   P A  PPAP+A+P A VPAPAP K        KK +AA AP+P L  PPAP  E+P P S + SP PS +D SGA  T V R   +G
Subjt:  PASPPPATPPPATPPPAPLASPPAAVPAPAPRK--------KKSKAASAPSP-LSSPPAPSAEAPVPTS-SDSPTPSQNDNSGAEETMVGRMAMIG

Arabidopsis top hitse value%identityAlignment
AT2G14890.1 arabinogalactan protein 95.9e-1753.76Show/hide
Query:  ICIA-FAGAGAQSPSTPPT--------------ATPPPVSAPPPV--------SAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPP--ASPPPATPPP-A
        ICI   AG   Q+P++PPT              ATPPPVSAPPPV        +APPP + PPPVS+PPPA+PPP + PP ++PPP  ASPPPATPPP A
Subjt:  ICIA-FAGAGAQSPSTPPT--------------ATPPPVSAPPPV--------SAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPP--ASPPPATPPP-A

Query:  TPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLSSPPAPSAEAPVP-TSSDSPTPSQ---NDNSGAEETMVGRMAMIGMGYVFMMV
        TPPPAPLASPPA VPAPAP  K    + +PSP SSPP PS++AP P T S SP PS    ND +GA + MV  + + G   V+ M+
Subjt:  TPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLSSPPAPSAEAPVP-TSSDSPTPSQ---NDNSGAEETMVGRMAMIGMGYVFMMV

AT2G14890.2 arabinogalactan protein 94.5e-1757.86Show/hide
Query:  ICIA-FAGAGAQSPSTPPT--------------ATPPPVSAPPPV--------SAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPP--ASPPPATPPP-A
        ICI   AG   Q+P++PPT              ATPPPVSAPPPV        +APPP + PPPVS+PPPA+PPP + PP ++PPP  ASPPPATPPP A
Subjt:  ICIA-FAGAGAQSPSTPPT--------------ATPPPVSAPPPV--------SAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPP--ASPPPATPPP-A

Query:  TPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLSSPPAPSAEAPVP-TSSDSPTPSQND
        TPPPAPLASPPA VPAPAP  K    + +PSP SSPP PS++AP P T S SP PS  D
Subjt:  TPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLSSPPAPSAEAPVP-TSSDSPTPSQND

AT4G37450.1 arabinogalactan protein 186.7e-0543.88Show/hide
Query:  MDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAP-------PPVSAP-------PPVSAPPPVSAP----------PPATPPPVSAPP---PSTPP
        MD   LL  T ICI  AG G QSP + PT +P   SAP       P V++P       P  SA  PV +P          PP TP P S+PP   P    
Subjt:  MDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAP-------PPVSAP-------PPVSAPPPVSAP----------PPATPPPVSAPP---PSTPP

Query:  PASPPPATPPPATPPPAPLASPPAAVPAPAPRK--------KKSKAASAPSP-LSSPPAPSAEAPVPTS-SDSPTPSQNDNSGAEETMVGRMAMIG
        P S PP   P A  PPAP+A+P A VPAPAP K        KK +AA AP+P L  PPAP  E+P P S + SP PS +D SGA  T V R   +G
Subjt:  PASPPPATPPPATPPPAPLASPPAAVPAPAPRK--------KKSKAASAPSP-LSSPPAPSAEAPVPTS-SDSPTPSQNDNSGAEETMVGRMAMIG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGATCCTCAAGCTTTGTTGTGTTTCACTTTCATCTGCATTGCCTTCGCCGGCGCCGGAGCTCAGTCCCCTTCCACTCCTCCCACCGCCACTCCTCCGCCTGTTTC
AGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCAGCTCCTCCTCCAGCCACTCCCCCTCCTGTCTCAGCTCCTCCTCCATCCACTCCTC
CTCCGGCATCTCCTCCTCCAGCTACTCCGCCTCCAGCAACCCCACCACCTGCGCCGTTGGCATCCCCACCAGCGGCAGTTCCAGCTCCTGCACCCCGTAAGAAGAAGTCG
AAGGCAGCTTCAGCACCATCGCCCCTGTCGAGTCCACCCGCGCCATCAGCTGAGGCCCCAGTACCCACCAGCTCTGATTCTCCTACCCCATCTCAAAACGACAATAGCGG
AGCGGAGGAGACGATGGTGGGGAGGATGGCGATGATTGGAATGGGATATGTATTTATGATGGTGTTAGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGATCCTCAAGCTTTGTTGTGTTTCACTTTCATCTGCATTGCCTTCGCCGGCGCCGGAGCTCAGTCCCCTTCCACTCCTCCCACCGCCACTCCTCCGCCTGTTTC
AGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCAGCTCCTCCTCCAGCCACTCCCCCTCCTGTCTCAGCTCCTCCTCCATCCACTCCTC
CTCCGGCATCTCCTCCTCCAGCTACTCCGCCTCCAGCAACCCCACCACCTGCGCCGTTGGCATCCCCACCAGCGGCAGTTCCAGCTCCTGCACCCCGTAAGAAGAAGTCG
AAGGCAGCTTCAGCACCATCGCCCCTGTCGAGTCCACCCGCGCCATCAGCTGAGGCCCCAGTACCCACCAGCTCTGATTCTCCTACCCCATCTCAAAACGACAATAGCGG
AGCGGAGGAGACGATGGTGGGGAGGATGGCGATGATTGGAATGGGATATGTATTTATGATGGTGTTAGGGTGAGGAGTGGACATTGTTGATATGTGTTTTGGTTGTGCAG
AGCTCCCATTTTTGGTGTCTGTGTTCCCTTGGGCTTCTCTATATTTCATTTCATTTTTACTATTATTTGCCCCCTTCTCTTGTTTGGGACATTTTTTTCTTTTAATTTAC
TAGCCCTTTG
Protein sequenceShow/hide protein sequence
MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAVPAPAPRKKKS
KAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG