CuGenDBv2

Gene ID	Carg27000
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S29
Genome location	Carg_Chr11:9062035..9064600
RNA-Seq Expression	Carg27000
Synteny	Carg27000
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001209 - Ribosomal protein S14 IPR039744 - 40S ribosomal protein S29/30S ribosomal protein S14 type Z IPR043140 - Ribosomal protein S14/S29

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7014949.1 40S ribosomal protein S29, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.5e-24

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPKSYGPGSRTC      RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

KAG7022492.1 40S ribosomal protein S29 [Cucurbita argyrosperma subsp. argyrosperma]

6.0e-30

100

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKKI
        MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKKI
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKKI

KOM36224.1 hypothetical protein LR48_Vigan02g237400 [Vigna angularis]

3.8e-24

88.52

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKK
        MGHSNVWNSHPK+YGPGSRTC      RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKK

PSS02648.1 40S ribosomal protein S29, partial [Actinidia chinensis var. chinensis]

6.5e-24

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPKSYGPGSRTC      RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

XP_007157215.1 hypothetical protein PHAVU_002G052200g, partial [Phaseolus vulgaris]

6.5e-24

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPKSYGPGSRTC      RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

TrEMBL top hits

e value

%identity

Alignment

A0A0L9U1C0 Uncharacterized protein

1.8e-24

88.52

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKK
        MGHSNVWNSHPK+YGPGSRTC      RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKK

A0A2R6RGW4 40S ribosomal protein S29 (Fragment)

3.1e-24

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPKSYGPGSRTC      RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

A0A498IZC1 Uncharacterized protein

3.1e-24

87.1

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKKI
        MGHSNVWNSHPK+YGPGSRTC      RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK I
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKKI

A0A6J1EQ53 40S ribosomal protein S29

3.1e-24

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPKSYGPGSRTC      RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

A0A6J1JB08 40S ribosomal protein S29

3.1e-24

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPKSYGPGSRTC      RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

SwissProt top hits

e value

%identity

Alignment

Q4PM47 40S ribosomal protein S29

3.0e-16

63.33

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH N+W SHP+ YGPGSR C      RVC N HGLIRKYGL  CR+CFR  A +IGF K
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q5I7K3 40S ribosomal protein S29

4.3e-23

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK+YG GSR C      RVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q680P8 40S ribosomal protein S29

6.7e-24

83.33

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR C      RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q6F473 40S ribosomal protein S29

6.7e-16

61.67

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH+N+W SHP+ YG GSR+C      R C N HGLIRKYGL  CRQCFR  A +IGF K
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q7XYB0 40S ribosomal protein S29

4.7e-17

61.67

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH N+W SHP+ YG GSR+C      ++CGN HGLIRKY +  CRQCFR  AK+IGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Arabidopsis top hits

e value

%identity

Alignment

AT3G43980.1 Ribosomal protein S14p/S29e family protein

4.8e-25

83.33

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR C      RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT3G44010.1 Ribosomal protein S14p/S29e family protein

4.8e-25

83.33

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR C      RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT4G33865.1 Ribosomal protein S14p/S29e family protein

4.8e-25

83.33

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Query:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR C      RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Sequences

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CDS sequence

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ATGGGGCATTCTAACGTCTGGAACTCGCACCCTAAGAGCTATGGTCCCGGCTCCCGCACCTGTTTGTCTAAATTGATTAGCCGGGTTTGCGGAAACCCTCATGGGTTGAT
CAGAAAGTACGGGCTTATGTGCTGCAGACAATGCTTCCGCAGCAACGCCAAGGAAATTGGGTTCATCAAGAAAATTTAA

mRNA sequence

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TTTGCCGCTTGCGAGGATTTTCGAAGGCTTAACGAGCTCTTAAGATTTCAATCTCTTAGGCAATCCAAGCATGGGGCATTCTAACGTCTGGAACTCGCACCCTAAGAGCT
ATGGTCCCGGCTCCCGCACCTGTTTGTCTAAATTGATTAGCCGGGTTTGCGGAAACCCTCATGGGTTGATCAGAAAGTACGGGCTTATGTGCTGCAGACAATGCTTCCGC
AGCAACGCCAAGGAAATTGGGTTCATCAAGAAAATTTAA

Protein sequence

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MGHSNVWNSHPKSYGPGSRTCLSKLISRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKKI

Carg27000 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome