CuGenDBv2

Gene ID	Carg27009
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L39
Genome location	Carg_Chr10:9721387..9723213
RNA-Seq Expression	Carg27009
Synteny	Carg27009
Gene Ontology terms	GO:0001732 - formation of cytoplasmic translation initiation complex (biological process) GO:0016282 - eukaryotic 43S preinitiation complex (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0033290 - eukaryotic 48S preinitiation complex (cellular component) GO:0071541 - eukaryotic translation initiation factor 3 complex, eIF3m (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003743 - translation initiation factor activity (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR000077 - Ribosomal protein L39e IPR020083 - Ribosomal protein L39e, conserved site IPR023626 - Ribosomal protein L39e domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

DAD31486.1 TPA_asm: hypothetical protein HUJ06_010337 [Nelumbo nucifera]

3.8e-20

96.15

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Query:  LEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        LEPSHKTF IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  LEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAB1204673.1 60S ribosomal protein L39-1 [Morella rubra]

1.7e-20

96.15

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Query:  LEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        L+PSHKTF+IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG7024013.1 60S ribosomal protein L39-1, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.4e-45

100

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Query:  MESVQIVGAQFDLQHMGRGAMQFLAVVDRILNFEDGNYFFLEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MESVQIVGAQFDLQHMGRGAMQFLAVVDRILNFEDGNYFFLEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MESVQIVGAQFDLQHMGRGAMQFLAVVDRILNFEDGNYFFLEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

PKI64675.1 hypothetical protein CRG98_014891 [Punica granatum]

3.8e-20

92.45

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Query:  FLEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        F++PSHKTF IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  FLEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

PLY88437.1 hypothetical protein LSAT_8X59320 [Lactuca sativa]

5.8e-21

87.5

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Query:  NYFFLEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        N ++L+PSHK+F+IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  NYFFLEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

TrEMBL top hits

e value

%identity

Alignment

A0A2J6LM76 Uncharacterized protein

2.8e-21

87.5

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Query:  NYFFLEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        N ++L+PSHK+F+IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  NYFFLEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A6A1UWI8 60S ribosomal protein L39-1

8.2e-21

96.15

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Query:  LEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        L+PSHKTF+IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A6J1C421 60S ribosomal protein L39-1-like

1.8e-20

100

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Query:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A6P5T1X5 60S ribosomal protein L39-1

1.8e-20

100

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Query:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

F6H3U8 Uncharacterized protein

6.3e-21

89.66

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Query:  NYFFLE--PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        N F+L+  PSHKTFIIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  NYFFLE--PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

SwissProt top hits

e value

%identity

Alignment

P51424 60S ribosomal protein L39-1

9.3e-22

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Query:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHK+F+IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51425 60S ribosomal protein L39

2.7e-21

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Query:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51426 60S ribosomal protein L39-2

2.7e-21

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Query:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q5SMI4 60S ribosomal protein L39-3

2.7e-21

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Query:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q6KAJ8 60S ribosomal protein L39-1

2.7e-21

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Query:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Arabidopsis top hits

e value

%identity

Alignment

AT2G25210.1 Ribosomal protein L39 family protein

3.4e-19

95.45

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Query:  IIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  IIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT3G02190.1 Ribosomal protein L39 family protein

2.1e-21

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Query:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHK+F+IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT4G31985.1 Ribosomal protein L39 family protein

6.6e-23

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Query:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHK+F+IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Sequences

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CDS sequence

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mRNA sequence

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ATGGAATCCGTTCAGATAGTGGGTGCACAATTCGACCTTCAACATATGGGTAGGGGCGCAATGCAATTTCTCGCTGTTGTCGACCGAATCCTGAATTTCGAAGATGGTAA
CTATTTCTTCTTGGAACCGTCTCACAAGACCTTCATAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATACGGTTGAGAACTGACA
ACACCATCAGGTACAATGCTAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGATTTTGAGGTGTTTCTCTTGTGATTTGCTCTTCATCCTGTTTGGAATCTTGTTTTAAC
TGTTATGTTAGTTGTGGAGAAGACAAAGGATATAGAGCTAGAGTTTTGAATTTTTTTCCTCTTAATTTAAGAACTTATTGAAGAGAAACTCACGATAATCTTTAGATTTA
CTGCACTGTTCAATTTATATCTGCAGTAATTTCTATTATCAAGTTAA

Protein sequence

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MESVQIVGAQFDLQHMGRGAMQFLAVVDRILNFEDGNYFFLEPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Carg27009 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome