; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg27042 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27042
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-directed RNA polymerases II and IV subunit 5A-like
Genome locationCarg_Chr18:4022522..4023177
RNA-Seq ExpressionCarg27042
SyntenyCarg27042
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR000783 - RNA polymerase, subunit H/Rpb5 C-terminal
IPR005571 - RNA polymerase, Rpb5, N-terminal
IPR014381 - DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus
IPR036710 - RNA polymerase Rpb5, N-terminal domain superfamily
IPR039531 - DNA-directed RNA polymerase subunit Rpb5-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573458.1 Lecithin-cholesterol acyltransferase-like 4, partial [Cucurbita argyrosperma subsp. sororia]6.1e-9499.46Show/hide
Query:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
        MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
Subjt:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL

Query:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE
        VVQQNLTPFARTCISEISSKFHLEVFQVL EIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE
Subjt:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE

KAG6593063.1 DNA-directed RNA polymerases II and IV subunit 5A, partial [Cucurbita argyrosperma subsp. sororia]1.7e-6774.05Show/hide
Query:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
        MVL+EEEITRLFR+RKT++QMLKDRGY+VGD ++DMSR QF+NKYG++MKRED+VINKA RN+SSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
Subjt:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL

Query:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE
        VVQQNLTPFARTCISEIS+KFHLEVFQ                            EAEL+VN+KDHVL+PEHQLL+NEEKKTLLE
Subjt:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE

KAG7012605.1 DNA-directed RNA polymerases II and IV subunit 5A, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-94100Show/hide
Query:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
        MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
Subjt:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL

Query:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE
        VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE
Subjt:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE

XP_022955185.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata]3.7e-7584.86Show/hide
Query:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
        MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
Subjt:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL

Query:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE
        VVQQNLTPFARTCISEISSKFHLEVFQ                            EAELMVNVKDHVLIPEHQLLTNEEKKTLLE
Subjt:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE

XP_023541037.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo]1.4e-7483.78Show/hide
Query:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
        MVLSEEEITRLFR+RKTLMQMLKDRGYYVGDLDI+MSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
Subjt:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL

Query:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE
        VVQQNLTPFARTCISEISSKFHLEVFQ                            EAELMVNVKDHVLIPEHQLLTNEEKKTLLE
Subjt:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE

TrEMBL top hitse value%identityAlignment
A0A6J1CPU1 DNA-directed RNA polymerases II and IV subunit 5A-like1.8e-6775.14Show/hide
Query:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
        MVLSEEEITRLFRIRKT++QMLKDR Y+VGD +IDMSR QF++KYG+NMKRED+VINKA RN+SSDQIY+FFPEE KVGVKTMKTYTNRMKSENVFRAIL
Subjt:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL

Query:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE
        VVQQNLTPFARTCISEISSKFHLEVFQ                            EAEL+VN+KDHVL+PEHQLLTNEEKKTLLE
Subjt:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE

A0A6J1GUG5 DNA-directed RNA polymerases II and IV subunit 5A-like1.8e-7584.86Show/hide
Query:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
        MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
Subjt:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL

Query:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE
        VVQQNLTPFARTCISEISSKFHLEVFQ                            EAELMVNVKDHVLIPEHQLLTNEEKKTLLE
Subjt:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE

A0A6J1H699 DNA-directed RNA polymerases II and IV subunit 5A-like8.1e-6874.05Show/hide
Query:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
        MVL+EEEITRLFR+RKT++QMLKDRGY+VGD ++DMSR QF+NKYG++MKRED+VINKA RN+SSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
Subjt:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL

Query:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE
        VVQQNLTPFARTCISEIS+KFHLEVFQ                            EAEL+VN+KDHVL+PEHQLL+NEEKKTLLE
Subjt:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE

A0A6J1JX71 DNA-directed RNA polymerases II and IV subunit 5A-like1.8e-7584.86Show/hide
Query:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
        MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
Subjt:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL

Query:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE
        VVQQNLTPFARTCISEISSKFHLEVFQ                            EAELMVNVKDHVLIPEHQLLTNEEKKTLLE
Subjt:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE

A0A6J1KT45 DNA-directed RNA polymerases II and IV subunit 5A-like8.1e-6874.05Show/hide
Query:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
        MVL+EEEITRLFR+RKT++QMLKDRGY+VGD ++DMSR QF+NKYG++MKRED+VINKA RN+SSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL
Subjt:  MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAIL

Query:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE
        VVQQNLTPFARTCISEIS+KFHLEVFQ                            EAEL+VN+KDHVL+PEHQLL+NEEKKTLLE
Subjt:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE

SwissProt top hitse value%identityAlignment
B0BNE2 DNA-directed RNA polymerases I, II, and III subunit RPABC19.3e-2937.3Show/hide
Query:  EEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGD-----NMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAI
        EEE  RL++IRKT+MQ+  DRGY V   ++D +  +F+ ++GD       +R DL +  A  ++ +DQ+++FFPEEPKVG+KT+K Y  RM+ EN+ RA+
Subjt:  EEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGD-----NMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAI

Query:  LVVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLL
        +VVQQ +TP A+  + +++ K+ LE F                             + EL++N+ +H L+PEH ++T EE   LL
Subjt:  LVVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLL

O81098 DNA-directed RNA polymerases II and IV subunit 5A6.0e-6065.22Show/hide
Query:  VLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILV
        +L+EEE+ RL+RI+KTLMQML+DRGY++ D ++ M++ QF  K+GDNMKREDLV  KA RN++SDQ+YIFFP+E KVGVKTMK YTNRMKSENVFRAILV
Subjt:  VLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILV

Query:  VQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE
        VQQNLTPFARTCISEISSKFHLEVFQ                            EAE++VN+K+HVL+PEHQ+LT EEKKTLLE
Subjt:  VQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE

P19388 DNA-directed RNA polymerases I, II, and III subunit RPABC13.5e-2837.3Show/hide
Query:  EEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGD-----NMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAI
        EEE  RL++IRKT+MQ+  DRGY V   ++D +  +F+ + GD       +R DL +  A  ++ +DQ+++FFPEEPKVG+KT+K Y  RM+ EN+ RA+
Subjt:  EEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGD-----NMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAI

Query:  LVVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLL
        +VVQQ +TP A+  + +++ K+ LE F                             + EL++N+ +H L+PEH ++T EE   LL
Subjt:  LVVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLL

Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC14.2e-2937.84Show/hide
Query:  EEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGD-----NMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAI
        EEE  RL++IRKT+MQ+  DRGY V   ++D +  +FR ++GD       +R DL +  A  ++ +DQ+++FFPEEPKVG+KT+K Y  RM+ EN+ RA+
Subjt:  EEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGD-----NMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAI

Query:  LVVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLL
        +VVQQ +TP A+  + +++ K+ LE F                             + EL++N+ +H L+PEH ++T EE   LL
Subjt:  LVVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLL

Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC19.3e-2937.3Show/hide
Query:  EEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGD-----NMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAI
        EEE  RL++IRKT+MQ+  DRGY V   ++D +  +F+ ++GD       +R DL +  A  ++ +DQ+++FFPEEPKVG+KT+K Y  RM+ EN+ RA+
Subjt:  EEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGD-----NMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAI

Query:  LVVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLL
        +VVQQ +TP A+  + +++ K+ LE F                             + EL++N+ +H L+PEH ++T EE   LL
Subjt:  LVVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLL

Arabidopsis top hitse value%identityAlignment
AT2G41340.1 RNA polymerase II fifth largest subunit, D3.9e-1431.69Show/hide
Query:  SEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTY-TNRMKSENVFRAILVV
        S  E  + +  R+T M+ML+DRGY V D DI++S  QFR  YG++   + L I+   R +SS +I + F     V V  M+    + +  EN+   ILV+
Subjt:  SEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTY-TNRMKSENVFRAILVV

Query:  QQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE
        Q ++T  A   +   S  F +E+F++                             +L+VNV  HVL P+HQ+L ++EK++LL+
Subjt:  QQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE

AT3G16680.1 DNA binding;DNA-directed RNA polymerases8.9e-1140.57Show/hide
Query:  MKTYTNRMKSENVFRAILVVQQNLTPFARTC---ISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEE
        MK Y +++KS NVFRAILVV Q++  F+R     +  +   FH+EVFQ                            E EL+VNVK+HV +PEHQ LT EE
Subjt:  MKTYTNRMKSENVFRAILVVQQNLTPFARTC---ISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEE

Query:  KKTLLE
        K+  LE
Subjt:  KKTLLE

AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein4.2e-6165.22Show/hide
Query:  VLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILV
        +L+EEE+ RL+RI+KTLMQML+DRGY++ D ++ M++ QF  K+GDNMKREDLV  KA RN++SDQ+YIFFP+E KVGVKTMK YTNRMKSENVFRAILV
Subjt:  VLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILV

Query:  VQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE
        VQQNLTPFARTCISEISSKFHLEVFQ                            EAE++VN+K+HVL+PEHQ+LT EEKKTLLE
Subjt:  VQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE

AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein1.7e-1431.52Show/hide
Query:  LSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKT-YTNRMKSENVFRAILV
        LS EE  R +  R+  +QML+DRGY V D DI++S + FR  YG+    + L I+   R++S+ ++ I F     V V  +++   + +  E +   ILV
Subjt:  LSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKT-YTNRMKSENVFRAILV

Query:  VQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE
        +Q ++T  A   I   S  F +E+FQ+                             +L+VN+  H L P+HQ+L +EEK TLL+
Subjt:  VQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE

AT5G57980.1 RNA polymerase II fifth largest subunit, C5.1e-2232.07Show/hide
Query:  EEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNM---KREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTM-KTYTNRMKSENVFRAIL
        ++EITR+F++R+T++QML+DRGY + + D+++ R +F  ++   M    +E L ++     N +D+IY+F+PE PKVGV  + K    +M+ + V R I+
Subjt:  EEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNM---KREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTM-KTYTNRMKSENVFRAIL

Query:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLL
        VV   +T  AR  +SE++    +EVF+                            EAEL+ N+ +H L+ ++ +L ++ KK LL
Subjt:  VVQQNLTPFARTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTTATCAGAGGAGGAAATCACCCGACTCTTTAGAATCCGAAAAACATTGATGCAAATGTTGAAAGATCGAGGCTACTATGTTGGAGATTTGGACATTGACATGTC
AAGAAATCAATTTAGGAATAAGTATGGTGATAACATGAAGAGAGAAGATCTTGTTATCAATAAAGCCATGAGAAATAATAGCTCTGATCAGATATATATATTTTTTCCCG
AAGAACCAAAGGTCGGTGTCAAGACGATGAAAACGTATACGAATCGTATGAAATCGGAGAATGTTTTTCGAGCTATATTGGTTGTTCAACAGAATTTGACCCCGTTTGCT
CGTACTTGTATAAGCGAAATATCGTCTAAATTCCATTTGGAGGTTTTTCAGGTATTGTTTGAGATTAAGCTGCAAAAGTTTTGTGATTTCCATATCATTGTGCTTATAAT
TGCCATTTTCTACTTCTTGTCGAAGGAAGCTGAATTGATGGTTAATGTTAAAGATCATGTTCTTATTCCTGAGCATCAGCTGTTGACAAATGAAGAGAAGAAGACGTTGT
TGGAG
mRNA sequenceShow/hide mRNA sequence
TTATTAGCTAAAAGCGATGGTGTTATCAGAGGAGGAAATCACCCGACTCTTTAGAATCCGAAAAACATTGATGCAAATGTTGAAAGATCGAGGCTACTATGTTGGAGATT
TGGACATTGACATGTCAAGAAATCAATTTAGGAATAAGTATGGTGATAACATGAAGAGAGAAGATCTTGTTATCAATAAAGCCATGAGAAATAATAGCTCTGATCAGATA
TATATATTTTTTCCCGAAGAACCAAAGGTCGGTGTCAAGACGATGAAAACGTATACGAATCGTATGAAATCGGAGAATGTTTTTCGAGCTATATTGGTTGTTCAACAGAA
TTTGACCCCGTTTGCTCGTACTTGTATAAGCGAAATATCGTCTAAATTCCATTTGGAGGTTTTTCAGGTATTGTTTGAGATTAAGCTGCAAAAGTTTTGTGATTTCCATA
TCATTGTGCTTATAATTGCCATTTTCTACTTCTTGTCGAAGGAAGCTGAATTGATGGTTAATGTTAAAGATCATGTTCTTATTCCTGAGCATCAGCTGTTGACAAATGAA
GAGAAGAAGACGTTGTTGGAG
Protein sequenceShow/hide protein sequence
MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAMRNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFA
RTCISEISSKFHLEVFQVLFEIKLQKFCDFHIIVLIIAIFYFLSKEAELMVNVKDHVLIPEHQLLTNEEKKTLLE