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Carg27068 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27068
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTransmembrane protein
Genome locationCarg_Chr20:11126154..11129787
RNA-Seq ExpressionCarg27068
SyntenyCarg27068
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571393.1 Protein spinster, partial [Cucurbita argyrosperma subsp. sororia]1.8e-68100Show/hide
Query:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEI
        MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEI
Subjt:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEI

Query:  TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFL
        TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFL
Subjt:  TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFL

XP_022928064.1 uncharacterized protein LOC111434961 [Cucurbita moschata]2.2e-82100Show/hide
Query:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEI
        MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEI
Subjt:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEI

Query:  TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ
        TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ
Subjt:  TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ

XP_022971697.1 uncharacterized protein LOC111470367 [Cucurbita maxima]7.8e-8097.04Show/hide
Query:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEI
        MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTE NSSAA+ASSST+RFVCDAARKGKNLPNQNFRIDSNRPRK QVSKDQSIRGEI
Subjt:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEI

Query:  TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ
        TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQ QESRKSQ
Subjt:  TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ

XP_023513112.1 uncharacterized protein LOC111777650 [Cucurbita pepo subsp. pepo]1.4e-8199.41Show/hide
Query:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEI
        MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEI
Subjt:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEI

Query:  TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ
        TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQ QESRKSQ
Subjt:  TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ

XP_038900493.1 uncharacterized protein LOC120087700 [Benincasa hispida]6.4e-5875.74Show/hide
Query:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSK-SSTEINSSAAVASSSTSRFVCDAARKGKNL-PNQNFRIDSNRPRKTQVSKDQSIRG
        MFNFEDELI+EPG SWLIWIQLLVI+LIF L CLT+FA+DFSK ++T+INS+AA+ASSST+RF+   +  GKN+ PN N  ID N PR  QV+ +QSIRG
Subjt:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSK-SSTEINSSAAVASSSTSRFVCDAARKGKNL-PNQNFRIDSNRPRKTQVSKDQSIRG

Query:  EITSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRK
        EITSSTSRR+TQV EG VVGG+GSQETK+DLHPCSYFRLAKSAFLRCLGLD+STE SVSDE QRQESRK
Subjt:  EITSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRK

TrEMBL top hitse value%identityAlignment
A0A0A0LM30 Uncharacterized protein1.1e-5572.09Show/hide
Query:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKS-STEINSSAAVASSST-SRFVCDAARKGKN-LPNQNFRIDSNRPRKTQVSKDQSIR
        MFNFEDELI++PG+SWLIWIQLLVI+LIF L CLT+FA DFSKS +T+ NS+AA+ASSS+ +RF+  +   GKN LPN N RI  N PR  QV+ DQS R
Subjt:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKS-STEINSSAAVASSST-SRFVCDAARKGKN-LPNQNFRIDSNRPRKTQVSKDQSIR

Query:  GEITSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ
        GEITSSTSRR+TQV EG V+GG+ SQETK+DLHPCSYFRLAKSAFLRCLGLDSST+ S+SDE QR ESRKS+
Subjt:  GEITSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ

A0A1S3C6P8 uncharacterized protein LOC1034974671.2e-5773.26Show/hide
Query:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSST-EINSSAAVA-SSSTSRFVCDAARKGKN-LPNQNFRIDSNRPRKTQVSKDQSIR
        MFNFEDELI++PG+SWLIWIQLLVI+L+F L CLT+FA+DFSKSST + NS+AA+A SSST+RF+  +A  GKN LPN N RI  N PR  QV+ DQS R
Subjt:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSST-EINSSAAVA-SSSTSRFVCDAARKGKN-LPNQNFRIDSNRPRKTQVSKDQSIR

Query:  GEITSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ
        GEITSST+RR+TQV EG V+GG+GSQETK+DLHPCSYFRLAKSAFLRCLGLDSS E S+SDE QR ESRKS+
Subjt:  GEITSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ

A0A5A7TVH8 Uncharacterized protein1.2e-5773.26Show/hide
Query:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSST-EINSSAAVA-SSSTSRFVCDAARKGKN-LPNQNFRIDSNRPRKTQVSKDQSIR
        MFNFEDELI++PG+SWLIWIQLLVI+L+F L CLT+FA+DFSKSST + NS+AA+A SSST+RF+  +A  GKN LPN N RI  N PR  QV+ DQS R
Subjt:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSST-EINSSAAVA-SSSTSRFVCDAARKGKN-LPNQNFRIDSNRPRKTQVSKDQSIR

Query:  GEITSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ
        GEITSST+RR+TQV EG V+GG+GSQETK+DLHPCSYFRLAKSAFLRCLGLDSS E S+SDE QR ESRKS+
Subjt:  GEITSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ

A0A6J1EJS6 uncharacterized protein LOC1114349611.1e-82100Show/hide
Query:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEI
        MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEI
Subjt:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEI

Query:  TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ
        TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ
Subjt:  TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ

A0A6J1I2P0 uncharacterized protein LOC1114703673.8e-8097.04Show/hide
Query:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEI
        MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTE NSSAA+ASSST+RFVCDAARKGKNLPNQNFRIDSNRPRK QVSKDQSIRGEI
Subjt:  MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEI

Query:  TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ
        TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQ QESRKSQ
Subjt:  TSSTSRRVTQVVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G64880.1 unknown protein8.4e-1638.55Show/hide
Query:  VSWLIWIQLLVIILIFALYC-LTVFAVDFSKSSTEINSS--AAVASSSTSRFVCDAARKGKNLP----NQNFRIDSNRPRKTQVSKDQSIRGEITSSTSR
        + WLIWIQ+LV +L+  L C + +F+ D   +S   + S  +   SS + RF+      G  +P       F ++S+  +  QV   QSI+GEIT + +R
Subjt:  VSWLIWIQLLVIILIFALYC-LTVFAVDFSKSSTEINSS--AAVASSSTSRFVCDAARKGKNLP----NQNFRIDSNRPRKTQVSKDQSIRGEITSSTSR

Query:  RVTQVVEGAVVGGDGSQETKVD---LHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ
        RVT V E     G+GS E        HPC+ FRLA SAFL+C G+D STE   +++  RQES+K +
Subjt:  RVTQVVEGAVVGGDGSQETKVD---LHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAATTTTGAAGATGAGCTGATTCTTGAACCCGGAGTTTCGTGGTTAATCTGGATCCAGCTTCTTGTTATCATCCTCATCTTCGCGCTTTATTGTCTTACCGTTTT
TGCGGTTGATTTCTCCAAAAGCAGTACTGAGATCAACTCCTCTGCCGCAGTTGCTTCGTCTTCTACTAGTCGGTTTGTTTGTGACGCTGCTCGCAAGGGGAAGAATCTTC
CGAATCAGAACTTCAGAATTGACTCTAATCGACCGCGGAAGACGCAGGTCTCTAAGGATCAAAGCATCAGGGGGGAGATAACAAGTAGTACGAGCAGGAGAGTCACACAA
GTGGTAGAAGGCGCTGTAGTAGGAGGGGACGGCTCTCAAGAAACCAAGGTAGATCTTCACCCTTGCAGTTATTTCAGGCTTGCTAAATCAGCTTTTCTCAGGTGCCTGGG
CTTGGACTCTTCAACTGAGATCTCAGTCTCAGATGAAATACAAAGACAGGAATCAAGAAAGTCCCAATAA
mRNA sequenceShow/hide mRNA sequence
CGTGAAGGGGTGAATGTGGTGACCGATGGGTCCATTTTCTGTACGCTCTCAAGGACCGTAACAGGGAAGCCGTTGGAGCTTCGAAGGCCTCCGATCATACCTTTTTGTTG
CCTTTCACGCTCTGTACTCATACCTTCCTTCACCTTTCTTCTTCTCCTCAAATCCACACACACCAACCAATTTCATTGCCAAAATTCATCCTCTCTATGAGATTTTACTT
CGCCTCAACATGTTCAATTTTGAAGATGAGCTGATTCTTGAACCCGGAGTTTCGTGGTTAATCTGGATCCAGCTTCTTGTTATCATCCTCATCTTCGCGCTTTATTGTCT
TACCGTTTTTGCGGTTGATTTCTCCAAAAGCAGTACTGAGATCAACTCCTCTGCCGCAGTTGCTTCGTCTTCTACTAGTCGGTTTGTTTGTGACGCTGCTCGCAAGGGGA
AGAATCTTCCGAATCAGAACTTCAGAATTGACTCTAATCGACCGCGGAAGACGCAGGTCTCTAAGGATCAAAGCATCAGGGGGGAGATAACAAGTAGTACGAGCAGGAGA
GTCACACAAGTGGTAGAAGGCGCTGTAGTAGGAGGGGACGGCTCTCAAGAAACCAAGGTAGATCTTCACCCTTGCAGTTATTTCAGGCTTGCTAAATCAGCTTTTCTCAG
GTGCCTGGGCTTGGACTCTTCAACTGAGATCTCAGTCTCAGATGAAATACAAAGACAGGAATCAAGAAAGTCCCAATAAAGTTGATGTATGTTCCACTTTTCCCATCATA
TGAATCCTTAAACATTTTGCTCGTCAGCTAATTGTGTCTTTATACCGTAATATATCTTTTCAAAAAGGTGAAAAAAAAGAGCAGAATTATGATTCTTATACTGCATGCGA
GATCGAAATTGACTGATCCATCCAAATACATACGCCATTCTCAAAGCATATAATTCTGGGTTAGAGTCTGTT
Protein sequenceShow/hide protein sequence
MFNFEDELILEPGVSWLIWIQLLVIILIFALYCLTVFAVDFSKSSTEINSSAAVASSSTSRFVCDAARKGKNLPNQNFRIDSNRPRKTQVSKDQSIRGEITSSTSRRVTQ
VVEGAVVGGDGSQETKVDLHPCSYFRLAKSAFLRCLGLDSSTEISVSDEIQRQESRKSQ