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Carg27074 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27074
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionsm-like protein LSM36B
Genome locationCarg_Chr04:53706..54572
RNA-Seq ExpressionCarg27074
SyntenyCarg27074
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0030490 - maturation of SSU-rRNA (biological process)
GO:0000932 - P-body (cellular component)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005688 - U6 snRNP (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0005732 - small nucleolar ribonucleoprotein complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR016487 - Sm-like protein Lsm6/SmF


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599859.1 Sm-like protein LSM36B, partial [Cucurbita argyrosperma subsp. sororia]3.4e-2282.19Show/hide
Query:  KVVRTHP---KLPCS---KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        K +R HP   KL      +GILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  KVVRTHP---KLPCS---KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
KAG7030535.1 Sm-like protein LSM36B, partial [Cucurbita argyrosperma subsp. argyrosperma]5.4e-36100Show/hide
Query:  MGEVGLFSIEKVVRTHPKLPCSKGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        MGEVGLFSIEKVVRTHPKLPCSKGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  MGEVGLFSIEKVVRTHPKLPCSKGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
XP_022942160.1 sm-like protein LSM36B isoform X1 [Cucurbita moschata]3.4e-2282.19Show/hide
Query:  KVVRTHP---KLPCS---KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        K +R HP   KL      +GILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  KVVRTHP---KLPCS---KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
XP_022988243.1 uncharacterized protein LOC111485552 [Cucurbita maxima]3.4e-2282.19Show/hide
Query:  KVVRTHP---KLPCS---KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        K +R HP   KL      +GILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  KVVRTHP---KLPCS---KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
XP_023539899.1 uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo]3.4e-2282.19Show/hide
Query:  KVVRTHP---KLPCS---KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        K +R HP   KL      +GILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  KVVRTHP---KLPCS---KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
TrEMBL top hitse value%identityAlignment
A0A0A0KSS9 Sm domain-containing protein6.2e-2298.18Show/hide
Query:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        +GILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
A0A6J1DNH0 sm-like protein LSM36B6.2e-2298.18Show/hide
Query:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        +GILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
A0A6J1FPX7 U6 snRNA-associated Sm-like protein LSm66.2e-2298.18Show/hide
Query:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        +GILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
A0A6J1FVQ8 sm-like protein LSM36B isoform X11.6e-2282.19Show/hide
Query:  KVVRTHP---KLPCS---KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        K +R HP   KL      +GILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  KVVRTHP---KLPCS---KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
A0A6J1JLP5 uncharacterized protein LOC1114855521.6e-2282.19Show/hide
Query:  KVVRTHP---KLPCS---KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
        K +R HP   KL      +GILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Subjt:  KVVRTHP---KLPCS---KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
SwissProt top hitse value%identityAlignment
A8NHT8 U6 snRNA-associated Sm-like protein LSm61.9e-1578.72Show/hide
Query:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSK
        +GIL+CLDGYMNIAMEQTEE VNG++ N+YGDAFIRGNNVLYIS  +
Subjt:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSK
O22823 Sm-like protein LSM36B1.1e-2083.33Show/hide
Query:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS
        +GIL CLDGYMNIAMEQTEEYVNGQLKN YGDAF+RGNNVLYIST+K TL++G+
Subjt:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS
P62312 U6 snRNA-associated Sm-like protein LSm64.3e-2088Show/hide
Query:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL
        +G+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFIRGNNVLYIST KR +
Subjt:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL
P62313 U6 snRNA-associated Sm-like protein LSm64.3e-2088Show/hide
Query:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL
        +G+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFIRGNNVLYIST KR +
Subjt:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL
Q9M1Z3 Sm-like protein LSM6A4.3e-2083.33Show/hide
Query:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS
        +G L CLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST   T+A+G+
Subjt:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS
Arabidopsis top hitse value%identityAlignment
AT2G14285.1 Small nuclear ribonucleoprotein family protein5.0e-0853.49Show/hide
Query:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI
        KG LA +D YMN+ +  TEEY++GQL    G+  IR NNVLY+
Subjt:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI
AT2G43810.1 Small nuclear ribonucleoprotein family protein8.0e-2283.33Show/hide
Query:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS
        +GIL CLDGYMNIAMEQTEEYVNGQLKN YGDAF+RGNNVLYIST+K TL++G+
Subjt:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS
AT2G43810.2 Small nuclear ribonucleoprotein family protein8.0e-2283.33Show/hide
Query:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS
        +GIL CLDGYMNIAMEQTEEYVNGQLKN YGDAF+RGNNVLYIST+K TL++G+
Subjt:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS
AT3G59810.1 Small nuclear ribonucleoprotein family protein3.0e-2183.33Show/hide
Query:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS
        +G L CLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST   T+A+G+
Subjt:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS
AT4G30220.1 small nuclear ribonucleoprotein F5.0e-0853.49Show/hide
Query:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI
        KG LA +D YMN+ +  TEEY++GQL    G+  IR NNVLY+
Subjt:  KGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAAGTTGGTCTCTTCTCAATAGAGAAAGTTGTGCGGACACATCCAAAGCTTCCTTGTTCAAAAGGTATTCTAGCTTGTCTTGATGGGTACATGAATATAGCAAT
GGAGCAAACTGAAGAATATGTTAATGGACAGTTGAAGAACAAATATGGTGATGCTTTTATCCGTGGAAATAATGTTCTATATATCAGTACTTCAAAGAGGACGTTAGCCG
AAGGATCGTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAAGTTGGTCTCTTCTCAATAGAGAAAGTTGTGCGGACACATCCAAAGCTTCCTTGTTCAAAAGGTATTCTAGCTTGTCTTGATGGGTACATGAATATAGCAAT
GGAGCAAACTGAAGAATATGTTAATGGACAGTTGAAGAACAAATATGGTGATGCTTTTATCCGTGGAAATAATGTTCTATATATCAGTACTTCAAAGAGGACGTTAGCCG
AAGGATCGTCATAG
Protein sequenceShow/hide protein sequence
MGEVGLFSIEKVVRTHPKLPCSKGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS