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Carg27080 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27080
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionribosomal protein L23AB
Genome locationCarg_Chr04:16997..18614
RNA-Seq ExpressionCarg27080
SyntenyCarg27080
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001014 - Ribosomal protein L23/L25, conserved site
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR013025 - Ribosomal protein L25/L23
IPR019985 - Ribosomal protein L23


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599854.1 60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia]1.2e-4876.32Show/hide
Query:  MAPKAENTKKADPKAQALKTAKAVK-----------RIGIPMR------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA
        MAPKAENTKKADPKAQALKTAKAVK           R  +                      PRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA
Subjt:  MAPKAENTKKADPKAQALKTAKAVK-----------RIGIPMR------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA

Query:  DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

KAG7030529.1 60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-58100Show/hide
Query:  MAPKAENTKKADPKAQALKTAKAVKRIGIPMRLPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGT
        MAPKAENTKKADPKAQALKTAKAVKRIGIPMRLPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGT
Subjt:  MAPKAENTKKADPKAQALKTAKAVKRIGIPMRLPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGT

Query:  KKAYVRLTPDYDALDVANKIGII
        KKAYVRLTPDYDALDVANKIGII
Subjt:  KKAYVRLTPDYDALDVANKIGII

XP_022154290.1 60S ribosomal protein L23a [Momordica charantia]2.2e-4774.51Show/hide
Query:  MAPKAENTKKADPKAQALKTAKAVK------------RIGIPMR------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIR
        MAPKA+NTKKADPKAQALKTAKAVK            R  +                      PR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIR
Subjt:  MAPKAENTKKADPKAQALKTAKAVK------------RIGIPMR------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIR

Query:  ADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        ADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  ADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

XP_022941924.1 60S ribosomal protein L23a-like [Cucurbita moschata]5.2e-4976.32Show/hide
Query:  MAPKAENTKKADPKAQALKTAKAVK-----------RIGIPMR------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA
        MAPKAENTKKADPKAQALKTAKAVK           R  +                     +PRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA
Subjt:  MAPKAENTKKADPKAQALKTAKAVK-----------RIGIPMR------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA

Query:  DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

XP_023541685.1 60S ribosomal protein L23a-like [Cucurbita pepo subsp. pepo]7.5e-4875Show/hide
Query:  MAPKAENTKKADPKAQALKTAKAVK-----------RIGIPMR------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA
        MAPKA+NTKK DPKAQALKTAKAVK           R  +                      PRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA
Subjt:  MAPKAENTKKADPKAQALKTAKAVK-----------RIGIPMR------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA

Query:  DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

TrEMBL top hitse value%identityAlignment
A0A5D3C5W3 50S ribosomal protein L23, chloroplastic3.1e-4773.08Show/hide
Query:  MAPKAENTKKADPKAQALKTAKAVK---------------------------------RIGIPMRLPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIV
        MAPKA++TKKADPKAQALKTAKAVK                                 RI +    PR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIV
Subjt:  MAPKAENTKKADPKAQALKTAKAVK---------------------------------RIGIPMRLPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIV

Query:  DIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        DIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  DIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

A0A6J1DJ76 50S ribosomal protein L23, chloroplastic1.1e-4774.51Show/hide
Query:  MAPKAENTKKADPKAQALKTAKAVK------------RIGIPMR------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIR
        MAPKA+NTKKADPKAQALKTAKAVK            R  +                      PR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIR
Subjt:  MAPKAENTKKADPKAQALKTAKAVK------------RIGIPMR------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIR

Query:  ADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        ADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  ADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

A0A6J1FPV3 50S ribosomal protein L23, chloroplastic2.5e-4976.32Show/hide
Query:  MAPKAENTKKADPKAQALKTAKAVK-----------RIGIPMR------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA
        MAPKAENTKKADPKAQALKTAKAVK           R  +                     +PRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA
Subjt:  MAPKAENTKKADPKAQALKTAKAVK-----------RIGIPMR------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA

Query:  DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

A0A6J1JKM4 50S ribosomal protein L23, chloroplastic1.1e-4774.34Show/hide
Query:  MAPKAENTKKADPKAQALKTAKAVK-----------RIGIPMR------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA
        MAPKA+NTKKADPKAQALKTAKAVK           R  +                      PR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA
Subjt:  MAPKAENTKKADPKAQALKTAKAVK-----------RIGIPMR------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA

Query:  DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI+
Subjt:  DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

W9R299 50S ribosomal protein L23, chloroplastic1.8e-4773.08Show/hide
Query:  MAPKAENTKKADPKAQALKTAKAVK---------------------------------RIGIPMRLPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIV
        MAPKA+NTKK+DPKAQA KTAKAVK                                 RI  P   PRHKLD YQILKYPLTTESAMKKIEDNNTLVFIV
Subjt:  MAPKAENTKKADPKAQALKTAKAVK---------------------------------RIGIPMRLPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIV

Query:  DIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        DIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  DIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

SwissProt top hitse value%identityAlignment
O22644 60S ribosomal protein L23A1.8e-4468.15Show/hide
Query:  MAPKAENTKKADPKAQALKTAKAVK----------------------------------RIGIPMRLPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFI
        MAP A+  KK D KAQALK AKAVK                                  RI  P   PR+KLD YQILKYPLTTESAMKKIEDNNTLVFI
Subjt:  MAPKAENTKKADPKAQALKTAKAVK----------------------------------RIGIPMRLPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFI

Query:  VDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        VDIRADKKKIK AVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Subjt:  VDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Q07761 60S ribosomal protein L23a1.8e-4469.48Show/hide
Query:  MAP-KAENTKKADPKAQALKTAKAVK------------RIGIPMRLP------------------RHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI
        MAP KA+ +KK+DPKAQA K AKAVK            R  +    P                  R+KLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI
Subjt:  MAP-KAENTKKADPKAQALKTAKAVK------------RIGIPMRLP------------------RHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI

Query:  RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        +ADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Q8LD46 60S ribosomal protein L23a-17.2e-4670.78Show/hide
Query:  MAP-KAENTKKADPKAQALKTAKAVK---------------------------RIGIPMRL---PRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI
        M+P K + TKKADPKA+ALK AKAVK                           R G   ++   PR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDI
Subjt:  MAP-KAENTKKADPKAQALKTAKAVK---------------------------RIGIPMRL---PRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI

Query:  RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Q9AT35 60S ribosomal protein L23a3.6e-4570.13Show/hide
Query:  MAP-KAENTKKADPKAQALKTAKAVK------------RIGIPMR------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI
        M+P K + TKK+D KAQALKTAKAVK            R  +                      PR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI
Subjt:  MAP-KAENTKKADPKAQALKTAKAVK------------RIGIPMR------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI

Query:  RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        RA+KKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Q9M3C3 60S ribosomal protein L23a-27.2e-4670.13Show/hide
Query:  MAP-KAENTKKADPKAQALKTAKAV----------------------KRIGIPMR--------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI
        M+P K + TKKADPKA+ALK AKAV                      K + +P +         PR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDI
Subjt:  MAP-KAENTKKADPKAQALKTAKAV----------------------KRIGIPMR--------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI

Query:  RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Arabidopsis top hitse value%identityAlignment
AT2G39460.1 ribosomal protein L23AA5.1e-4770.78Show/hide
Query:  MAP-KAENTKKADPKAQALKTAKAVK---------------------------RIGIPMRL---PRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI
        M+P K + TKKADPKA+ALK AKAVK                           R G   ++   PR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDI
Subjt:  MAP-KAENTKKADPKAQALKTAKAVK---------------------------RIGIPMRL---PRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI

Query:  RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

AT2G39460.2 ribosomal protein L23AA5.1e-4770.78Show/hide
Query:  MAP-KAENTKKADPKAQALKTAKAVK---------------------------RIGIPMRL---PRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI
        M+P K + TKKADPKA+ALK AKAVK                           R G   ++   PR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDI
Subjt:  MAP-KAENTKKADPKAQALKTAKAVK---------------------------RIGIPMRL---PRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI

Query:  RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

AT3G55280.1 ribosomal protein L23AB5.1e-4770.13Show/hide
Query:  MAP-KAENTKKADPKAQALKTAKAV----------------------KRIGIPMR--------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI
        M+P K + TKKADPKA+ALK AKAV                      K + +P +         PR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDI
Subjt:  MAP-KAENTKKADPKAQALKTAKAV----------------------KRIGIPMR--------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI

Query:  RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

AT3G55280.2 ribosomal protein L23AB5.1e-4770.13Show/hide
Query:  MAP-KAENTKKADPKAQALKTAKAV----------------------KRIGIPMR--------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI
        M+P K + TKKADPKA+ALK AKAV                      K + +P +         PR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDI
Subjt:  MAP-KAENTKKADPKAQALKTAKAV----------------------KRIGIPMR--------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDI

Query:  RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  RADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

AT3G55280.3 ribosomal protein L23AB4.7e-4873.65Show/hide
Query:  MAP-KAENTKKADPKAQALKTAKAVKRIGIPMR------------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKK
        M+P K + TKKADPKA+ALK AKAVK   I +R                         PR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKK
Subjt:  MAP-KAENTKKADPKAQALKTAKAVKRIGIPMR------------------------LPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKK

Query:  IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACCTAAAGCTGAAAACACCAAGAAGGCTGATCCTAAAGCACAAGCCCTGAAGACAGCCAAGGCGGTCAAAAGGATAGGAATCCCAATGCGACTTCCTAGACATAA
GTTAGACCAATACCAAATTCTTAAATATCCATTGACCACTGAGTCTGCAATGAAGAAGATTGAGGATAATAACACACTTGTTTTTATTGTCGATATTCGTGCCGACAAGA
AAAAAATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGCCTGATGGAACAAAGAAGGCATATGTTAGGTTAACCCCAGAC
TATGATGCTCTAGACGTGGCAAACAAGATTGGAATTATC
mRNA sequenceShow/hide mRNA sequence
TTTCTTCTTTCTAGGGCAGCAGCACTGGCAGCACTCCGCTCGTAGCCGCCGGGTTTCAGCGATGGCACCTAAAGCTGAAAACACCAAGAAGGCTGATCCTAAAGCACAAG
CCCTGAAGACAGCCAAGGCGGTCAAAAGGATAGGAATCCCAATGCGACTTCCTAGACATAAGTTAGACCAATACCAAATTCTTAAATATCCATTGACCACTGAGTCTGCA
ATGAAGAAGATTGAGGATAATAACACACTTGTTTTTATTGTCGATATTCGTGCCGACAAGAAAAAAATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGACCAAGAA
AGTGAACACTTTAATCAGGCCTGATGGAACAAAGAAGGCATATGTTAGGTTAACCCCAGACTATGATGCTCTAGACGTGGCAAACAAGATTGGAATTATC
Protein sequenceShow/hide protein sequence
MAPKAENTKKADPKAQALKTAKAVKRIGIPMRLPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPD
YDALDVANKIGII