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Carg27084 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27084
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpatellin-3-like
Genome locationCarg_Chr04:2933..4347
RNA-Seq ExpressionCarg27084
SyntenyCarg27084
Gene Ontology termsGO:0007049 - cell cycle (biological process)
GO:0051301 - cell division (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016020 - membrane (cellular component)
GO:0008289 - lipid binding (molecular function)
InterPro domainsIPR036273 - CRAL/TRIO, N-terminal domain superfamily
IPR036865 - CRAL-TRIO lipid binding domain superfamily
IPR044834 - Patellin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037098.1 patellin-3-like [Cucumis melo var. makuwa]5.1e-1876.81Show/hide
Query:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD
        EKKLSIWGVPLLED RT VILL FLRAR+FKVRDAF MFRNTIRWREEFGIDSL+       +L DDL+
Subjt:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD

KAG7030525.1 Patellin-3, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-172100Show/hide
Query:  MTSNCNLHVYSHVNHKTPPKGREKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLDTAGRGVFRK
        MTSNCNLHVYSHVNHKTPPKGREKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLDTAGRGVFRK
Subjt:  MTSNCNLHVYSHVNHKTPPKGREKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLDTAGRGVFRK

Query:  LHAPRKNSSYLLEVGFSSYISSQAGSTPEKTIPLYSLIAPRLKRGYLPWCVTIKNRVYISFPLVLEEPASSPVSDTFKPVASSCRWQFRNSLLFVSGHWT
        LHAPRKNSSYLLEVGFSSYISSQAGSTPEKTIPLYSLIAPRLKRGYLPWCVTIKNRVYISFPLVLEEPASSPVSDTFKPVASSCRWQFRNSLLFVSGHWT
Subjt:  LHAPRKNSSYLLEVGFSSYISSQAGSTPEKTIPLYSLIAPRLKRGYLPWCVTIKNRVYISFPLVLEEPASSPVSDTFKPVASSCRWQFRNSLLFVSGHWT

Query:  LSVISLSSKRDSHWSSLSPSVPRETRGFQEQDVIVKERSPTGLWGRVLSGPRTNRYWKGSFHTSHSRIFALTKTPKPFARAPESYLRDALANVSIR
        LSVISLSSKRDSHWSSLSPSVPRETRGFQEQDVIVKERSPTGLWGRVLSGPRTNRYWKGSFHTSHSRIFALTKTPKPFARAPESYLRDALANVSIR
Subjt:  LSVISLSSKRDSHWSSLSPSVPRETRGFQEQDVIVKERSPTGLWGRVLSGPRTNRYWKGSFHTSHSRIFALTKTPKPFARAPESYLRDALANVSIR

XP_008441140.1 PREDICTED: patellin-3-like [Cucumis melo]5.1e-1876.81Show/hide
Query:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD
        EKKLSIWGVPLLED RT VILL FLRAR+FKVRDAF MFRNTIRWREEFGIDSL+       +L DDL+
Subjt:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD

XP_031736923.1 patellin-3 [Cucumis sativus]5.1e-1876.81Show/hide
Query:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD
        EKKLSIWGVPLLED RT VILL FLRAR+FKVRDAF MFRNTIRWREEFGIDSL+       +L DDL+
Subjt:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD

XP_038885156.1 LOW QUALITY PROTEIN: patellin-3-like [Benincasa hispida]5.1e-1876.81Show/hide
Query:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD
        EKKLSIWGVPLLED RT VILL FLRAR+FKVRDAF MFRNTIRWREEFGIDSL+       +L DDL+
Subjt:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD

TrEMBL top hitse value%identityAlignment
A0A0A0LMC9 Uncharacterized protein2.5e-1876.81Show/hide
Query:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD
        EKKLSIWGVPLLED RT VILL FLRAR+FKVRDAF MFRNTIRWREEFGIDSL+       +L DDL+
Subjt:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD

A0A1S3B3D5 patellin-3-like2.5e-1876.81Show/hide
Query:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD
        EKKLSIWGVPLLED RT VILL FLRAR+FKVRDAF MFRNTIRWREEFGIDSL+       +L DDL+
Subjt:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD

A0A5D3C884 Patellin-3-like2.5e-1876.81Show/hide
Query:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD
        EKKLSIWGVPLLED RT VILL FLRAR+FKVRDAF MFRNTIRWREEFGIDSL+       +L DDL+
Subjt:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD

A0A6J1H9R1 patellin-3-like9.4e-1875.36Show/hide
Query:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD
        EKKLSIWGVPL ED RT VILL FLRAREFKVRDAF MF+NTIRWREEFGIDSL+       +L DDL+
Subjt:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD

A0A6J1JR74 patellin-3-like9.4e-1875.36Show/hide
Query:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD
        EKKLSIWGVPL ED RT VILL FLRAREFKVRDAF MF+NTIRWREEFGIDSL+       +L DDL+
Subjt:  EKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD

SwissProt top hitse value%identityAlignment
Q56WK6 Patellin-11.3e-1157.41Show/hide
Query:  KKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLL
        +++SIWGVPLL+D R+ VIL  FLRAR+FKV++A  M +NT++WR+E  ID L+
Subjt:  KKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLL

Q56Z59 Patellin-37.1e-1557.35Show/hide
Query:  KKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD
        +++ IWG+PLLED R+ V+LL FLRAREFKV+D+F M +NTI+WR+EF ID L+        L DDLD
Subjt:  KKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD

Q56ZI2 Patellin-23.9e-1361.11Show/hide
Query:  KKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLL
        +++SIWG+PLLED R+ VILL FLRAR+FKV++AF M +NT++WR+E  ID L+
Subjt:  KKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLL

Q94C59 Patellin-44.1e-1045.88Show/hide
Query:  EKKLSIWGVPLLED---HRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLDTAG--RGVFRKLH
        +K + +WGVPLL       T VILL FLRAR+FKV +AF M + T++WR++  IDS+L   F      +DL TA    GV R+ H
Subjt:  EKKLSIWGVPLLED---HRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLDTAG--RGVFRKLH

Q9M0R2 Patellin-51.1e-1243.82Show/hide
Query:  SNCNLHVYSHVNHKTPPKGREKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD
        S   L+    + H         K SIWGVPLL+D RT V+LL FLRAR+FK ++A+ M   T++WR +F I+ LL       +L DDLD
Subjt:  SNCNLHVYSHVNHKTPPKGREKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD

Arabidopsis top hitse value%identityAlignment
AT1G22530.1 PATELLIN 22.8e-1461.11Show/hide
Query:  KKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLL
        +++SIWG+PLLED R+ VILL FLRAR+FKV++AF M +NT++WR+E  ID L+
Subjt:  KKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLL

AT1G30690.1 Sec14p-like phosphatidylinositol transfer family protein2.9e-1145.88Show/hide
Query:  EKKLSIWGVPLLED---HRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLDTAG--RGVFRKLH
        +K + +WGVPLL       T VILL FLRAR+FKV +AF M + T++WR++  IDS+L   F      +DL TA    GV R+ H
Subjt:  EKKLSIWGVPLLED---HRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLDTAG--RGVFRKLH

AT1G72150.1 PATELLIN 19.0e-1357.41Show/hide
Query:  KKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLL
        +++SIWGVPLL+D R+ VIL  FLRAR+FKV++A  M +NT++WR+E  ID L+
Subjt:  KKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLL

AT1G72160.1 Sec14p-like phosphatidylinositol transfer family protein5.1e-1657.35Show/hide
Query:  KKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD
        +++ IWG+PLLED R+ V+LL FLRAREFKV+D+F M +NTI+WR+EF ID L+        L DDLD
Subjt:  KKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD

AT4G09160.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein8.1e-1443.82Show/hide
Query:  SNCNLHVYSHVNHKTPPKGREKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD
        S   L+    + H         K SIWGVPLL+D RT V+LL FLRAR+FK ++A+ M   T++WR +F I+ LL       +L DDLD
Subjt:  SNCNLHVYSHVNHKTPPKGREKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCTAATTGCAATTTGCATGTATATTCACATGTAAATCACAAAACACCACCGAAAGGAAGAGAGAAGAAGCTGTCAATTTGGGGGGTTCCTCTTCTTGAAGACCA
CCGGACGGGTGTGATTCTGCTGATGTTTTTGAGGGCGAGGGAGTTCAAAGTGAGGGATGCATTCCCTATGTTCCGAAACACAATTCGGTGGAGGGAGGAATTTGGTATCG
ACTCTCTCTTGTGTTGTACGTTTAGGCATATCTCTCTGGAGGACGATCTGGATACAGCAGGGAGAGGAGTTTTTAGGAAACTTCACGCGCCACGCAAGAATAGTTCTTAC
TTGTTGGAGGTAGGTTTCAGCTCCTATATAAGCAGCCAAGCGGGATCCACTCCTGAGAAGACCATTCCTTTATATTCTCTGATCGCTCCAAGATTGAAGAGAGGCTATCT
TCCCTGGTGTGTCACTATAAAAAACAGGGTCTACATTTCTTTTCCACTGGTTTTAGAGGAACCAGCATCTTCCCCTGTTTCCGACACCTTCAAGCCAGTGGCATCATCAT
GTCGCTGGCAATTCCGTAATTCATTGCTTTTTGTGTCTGGTCATTGGACGCTAAGTGTTATTTCTTTATCTAGCAAGCGGGACTCTCACTGGTCCTCCCTTTCCCCGAGC
GTCCCCCGAGAGACCAGAGGCTTTCAGGAGCAGGATGTTATCGTTAAAGAAAGGTCACCGACTGGGTTGTGGGGTCGAGTACTGAGCGGACCAAGGACAAACAGATACTG
GAAGGGGAGTTTCCACACATCTCATTCACGAATTTTCGCACTTACCAAGACGCCGAAACCATTTGCACGCGCACCAGAGTCCTATTTGCGCGATGCCTTGGCAAATGTAA
GCATAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTCTAATTGCAATTTGCATGTATATTCACATGTAAATCACAAAACACCACCGAAAGGAAGAGAGAAGAAGCTGTCAATTTGGGGGGTTCCTCTTCTTGAAGACCA
CCGGACGGGTGTGATTCTGCTGATGTTTTTGAGGGCGAGGGAGTTCAAAGTGAGGGATGCATTCCCTATGTTCCGAAACACAATTCGGTGGAGGGAGGAATTTGGTATCG
ACTCTCTCTTGTGTTGTACGTTTAGGCATATCTCTCTGGAGGACGATCTGGATACAGCAGGGAGAGGAGTTTTTAGGAAACTTCACGCGCCACGCAAGAATAGTTCTTAC
TTGTTGGAGGTAGGTTTCAGCTCCTATATAAGCAGCCAAGCGGGATCCACTCCTGAGAAGACCATTCCTTTATATTCTCTGATCGCTCCAAGATTGAAGAGAGGCTATCT
TCCCTGGTGTGTCACTATAAAAAACAGGGTCTACATTTCTTTTCCACTGGTTTTAGAGGAACCAGCATCTTCCCCTGTTTCCGACACCTTCAAGCCAGTGGCATCATCAT
GTCGCTGGCAATTCCGTAATTCATTGCTTTTTGTGTCTGGTCATTGGACGCTAAGTGTTATTTCTTTATCTAGCAAGCGGGACTCTCACTGGTCCTCCCTTTCCCCGAGC
GTCCCCCGAGAGACCAGAGGCTTTCAGGAGCAGGATGTTATCGTTAAAGAAAGGTCACCGACTGGGTTGTGGGGTCGAGTACTGAGCGGACCAAGGACAAACAGATACTG
GAAGGGGAGTTTCCACACATCTCATTCACGAATTTTCGCACTTACCAAGACGCCGAAACCATTTGCACGCGCACCAGAGTCCTATTTGCGCGATGCCTTGGCAAATGTAA
GCATAAGATAG
Protein sequenceShow/hide protein sequence
MTSNCNLHVYSHVNHKTPPKGREKKLSIWGVPLLEDHRTGVILLMFLRAREFKVRDAFPMFRNTIRWREEFGIDSLLCCTFRHISLEDDLDTAGRGVFRKLHAPRKNSSY
LLEVGFSSYISSQAGSTPEKTIPLYSLIAPRLKRGYLPWCVTIKNRVYISFPLVLEEPASSPVSDTFKPVASSCRWQFRNSLLFVSGHWTLSVISLSSKRDSHWSSLSPS
VPRETRGFQEQDVIVKERSPTGLWGRVLSGPRTNRYWKGSFHTSHSRIFALTKTPKPFARAPESYLRDALANVSIR