; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg27107 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27107
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCarg_Chr08:5363811..5365444
RNA-Seq ExpressionCarg27107
SyntenyCarg27107
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026012.1 hypothetical protein SDJN02_12510, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-116100Show/hide
Query:  MTSMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTN
        MTSMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTN
Subjt:  MTSMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTN

Query:  LMALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQKGRCEILGHDGDAVSEFRIVLYPMLFFLNLTYDVQTVWFHKTITNTHDVMIFP
        LMALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQKGRCEILGHDGDAVSEFRIVLYPMLFFLNLTYDVQTVWFHKTITNTHDVMIFP
Subjt:  LMALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQKGRCEILGHDGDAVSEFRIVLYPMLFFLNLTYDVQTVWFHKTITNTHDVMIFP

Query:  VFERFAQYVIYFPRM
        VFERFAQYVIYFPRM
Subjt:  VFERFAQYVIYFPRM

XP_022964072.1 uncharacterized protein LOC111464209 [Cucurbita moschata]1.9e-9183.18Show/hide
Query:  MTSMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTN
        MTSMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQ+FHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTN
Subjt:  MTSMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTN

Query:  LMALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQ------------------------------------KGRCEILGHDGDAVSEF
        LMALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQ                                    KGRCEILGHDGDAVSEF
Subjt:  LMALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQ------------------------------------KGRCEILGHDGDAVSEF

Query:  RIVLYPMLFFLNLTYDVQTV
        RIVLYPMLFFLNLTYDVQTV
Subjt:  RIVLYPMLFFLNLTYDVQTV

XP_023000630.1 uncharacterized protein LOC111494874 [Cucurbita maxima]5.8e-10480.88Show/hide
Query:  MTSMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTN
        MTSMFLVR+KNFRPLVDGTSRLAQIARESDIIFTPLSL LTTS PSPRFIA LQ+FHQCFTVYSVNIDH SRISLESLHDALLDCGSSS+MTIHLLENTN
Subjt:  MTSMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTN

Query:  LMALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQ------------------------------------KGRCEILGHDGDAVSEF
        LM LRFETPNHEPQLRHD VLLPPQEQSIEEIEYSKSLALD RDLRQ                                    KGRCEILGHDGDAV+EF
Subjt:  LMALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQ------------------------------------KGRCEILGHDGDAVSEF

Query:  RIVLYPMLFFLNLTYDVQTVWFHKTITNTHDVMIFPVFERFAQYVIYFPRM
        RIVLYPMLFFLNLTYDVQTVWFHKTITNTHDVMIFPVFE FAQYVIYFPRM
Subjt:  RIVLYPMLFFLNLTYDVQTVWFHKTITNTHDVMIFPVFERFAQYVIYFPRM

XP_023514484.1 uncharacterized protein LOC111778743 [Cucurbita pepo subsp. pepo]3.1e-8981.36Show/hide
Query:  MTSMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTN
        MTSMFLVRVKNFRPLVDGTSRLAQI RESDIIFTPLSLMLTTSGPSPRFIAMLQ+FHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTN
Subjt:  MTSMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTN

Query:  LMALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQ------------------------------------KGRCEILGHDGDAVSEF
        LM LRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALD RDLRQ                                    KGRCEILGHDGDAV+EF
Subjt:  LMALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQ------------------------------------KGRCEILGHDGDAVSEF

Query:  RIVLYPMLFFLNLTYDVQTV
        RIVLYPMLFFLNLTYDVQTV
Subjt:  RIVLYPMLFFLNLTYDVQTV

XP_031744160.1 uncharacterized protein LOC116404808 [Cucumis sativus]2.2e-4745.53Show/hide
Query:  MFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTNLMA
        MFLVR+KNF P    TSRLA IARE+D+ FTPL   +T S   PRF+A L + + CF  Y V+ DH SRISLES HDALLD G S SMTIHLL N N M 
Subjt:  MFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTNLMA

Query:  LRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLR------------------------------------QKGRCEILGHDGDAVSEFRIV
        LRFE+ +H PQ+RH++ L P QE+ + EI+Y+K  ++D + LR                                    +   C I+G++G+  ++  I 
Subjt:  LRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLR------------------------------------QKGRCEILGHDGDAVSEFRIV

Query:  LYPMLFFLNLTYDVQTVWFHKTITNTHDVMIFPVFERFAQYVIYFP
        L PMLFFLN T+D   VWF+KT T  H  M+ P F  ++QYVI FP
Subjt:  LYPMLFFLNLTYDVQTVWFHKTITNTHDVMIFPVFERFAQYVIYFP

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980101.6e-3841.31Show/hide
Query:  MFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTNLMA
        MFLVR++ F PL+D TS LAQ+A+++D+ FTPL LM+  S  SP+F+A LQ+  + FT +SV+ +  S++SL+  HDA+LD GS SSMTIHLL+ TN M 
Subjt:  MFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTNLMA

Query:  LRFETPNHE-PQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLR------------------------------------QKGRCEILGHDGDAVSEFRI
        LRFETP+H+ P L H++ L PPQ +++ ++EY     +  R+LR                                    + G C+I+G++G+  ++ ++
Subjt:  LRFETPNHE-PQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLR------------------------------------QKGRCEILGHDGDAVSEFRI

Query:  VLYPMLFFLNLTY
        VL PM+FFLN TY
Subjt:  VLYPMLFFLNLTY

A0A1S3CL88 uncharacterized protein LOC1035022508.8e-4243.65Show/hide
Query:  MFLVRVKNFRPLVDGTSRLAQIARE-SDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTNLM
        MFLV++KNF PL+D TS LAQI+ + +D+ FTP    +  S  SPRFIA LQ+  Q FT +SV+ DH S++SLES HDA+LD GS +SMTIHLL+ TN M
Subjt:  MFLVRVKNFRPLVDGTSRLAQIARE-SDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTNLM

Query:  ALRFETPNHEPQ-LRHDVVLLPPQ-------EQSIEEIEY----SKSLALDPRDL----------------------------RQKGR-CEILGHDGDAV
         LRF+TP+ E Q L H++ L PPQ       +  ++E +Y    SK+L    +DL                              +GR C+I G + +  
Subjt:  ALRFETPNHEPQ-LRHDVVLLPPQ-------EQSIEEIEY----SKSLALDPRDL----------------------------RQKGR-CEILGHDGDAV

Query:  SEFRIVLYPMLFFLNLTYDVQTVWFHKTITNTHDVMIFPVFERFAQYVIYFP
        ++F+I+L PM+FFLN TY    VWF+KT  N + +M+ P +  F QYVIYFP
Subjt:  SEFRIVLYPMLFFLNLTYDVQTVWFHKTITNTHDVMIFPVFERFAQYVIYFP

A0A1S4E4N8 uncharacterized protein LOC1035022637.7e-3854.09Show/hide
Query:  SMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTNLM
        +MFLVR+K+F PL D TSRLAQIARE+DI FTPL   +  S  SPRF+A LQ+ H CF  Y V+ DH SRISLES HDALLD G+S SMTIHLL N   +
Subjt:  SMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTNLM

Query:  ALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQKGRCEILGHDGDAV
         LRFE+ +H P++ H++ L P QE+ + E++Y+K  ++D +DLR+  R   + H GD++
Subjt:  ALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQKGRCEILGHDGDAV

A0A6J1HGU2 uncharacterized protein LOC1114642099.3e-9283.18Show/hide
Query:  MTSMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTN
        MTSMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQ+FHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTN
Subjt:  MTSMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTN

Query:  LMALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQ------------------------------------KGRCEILGHDGDAVSEF
        LMALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQ                                    KGRCEILGHDGDAVSEF
Subjt:  LMALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQ------------------------------------KGRCEILGHDGDAVSEF

Query:  RIVLYPMLFFLNLTYDVQTV
        RIVLYPMLFFLNLTYDVQTV
Subjt:  RIVLYPMLFFLNLTYDVQTV

A0A6J1KIW5 uncharacterized protein LOC1114948742.8e-10480.88Show/hide
Query:  MTSMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTN
        MTSMFLVR+KNFRPLVDGTSRLAQIARESDIIFTPLSL LTTS PSPRFIA LQ+FHQCFTVYSVNIDH SRISLESLHDALLDCGSSS+MTIHLLENTN
Subjt:  MTSMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTN

Query:  LMALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQ------------------------------------KGRCEILGHDGDAVSEF
        LM LRFETPNHEPQLRHD VLLPPQEQSIEEIEYSKSLALD RDLRQ                                    KGRCEILGHDGDAV+EF
Subjt:  LMALRFETPNHEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQ------------------------------------KGRCEILGHDGDAVSEF

Query:  RIVLYPMLFFLNLTYDVQTVWFHKTITNTHDVMIFPVFERFAQYVIYFPRM
        RIVLYPMLFFLNLTYDVQTVWFHKTITNTHDVMIFPVFE FAQYVIYFPRM
Subjt:  RIVLYPMLFFLNLTYDVQTVWFHKTITNTHDVMIFPVFERFAQYVIYFPRM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAGCATGTTCTTGGTGAGGGTCAAGAACTTTCGCCCTCTTGTGGACGGAACCTCCCGGCTCGCTCAAATTGCAAGGGAATCCGACATTATATTCACACCATTGTC
GCTCATGTTAACAACCTCCGGGCCTTCCCCTCGCTTCATTGCAATGCTGCAAGTATTCCACCAGTGCTTCACCGTCTACTCCGTCAATATCGATCACCGTTCCAGGATTT
CCCTCGAATCATTACACGATGCTTTGTTGGATTGCGGATCTTCTTCTTCAATGACCATTCATCTTCTTGAAAACACAAACCTAATGGCCCTTAGATTTGAAACTCCAAAT
CATGAGCCACAACTCCGTCATGATGTTGTATTGTTACCACCTCAAGAACAGTCTATAGAAGAAATTGAATATTCAAAATCTTTAGCACTTGATCCGCGAGATTTACGACA
AAAAGGGCGATGTGAAATTCTGGGTCATGATGGAGATGCTGTGTCTGAATTTCGAATCGTTCTGTATCCTATGCTGTTTTTCCTTAATTTGACGTATGATGTACAGACAG
TATGGTTTCATAAGACAATAACCAATACTCATGATGTCATGATTTTTCCAGTTTTTGAACGTTTTGCTCAATATGTCATCTATTTTCCTCGAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTAGCATGTTCTTGGTGAGGGTCAAGAACTTTCGCCCTCTTGTGGACGGAACCTCCCGGCTCGCTCAAATTGCAAGGGAATCCGACATTATATTCACACCATTGTC
GCTCATGTTAACAACCTCCGGGCCTTCCCCTCGCTTCATTGCAATGCTGCAAGTATTCCACCAGTGCTTCACCGTCTACTCCGTCAATATCGATCACCGTTCCAGGATTT
CCCTCGAATCATTACACGATGCTTTGTTGGATTGCGGATCTTCTTCTTCAATGACCATTCATCTTCTTGAAAACACAAACCTAATGGCCCTTAGATTTGAAACTCCAAAT
CATGAGCCACAACTCCGTCATGATGTTGTATTGTTACCACCTCAAGAACAGTCTATAGAAGAAATTGAATATTCAAAATCTTTAGCACTTGATCCGCGAGATTTACGACA
AAAAGGGCGATGTGAAATTCTGGGTCATGATGGAGATGCTGTGTCTGAATTTCGAATCGTTCTGTATCCTATGCTGTTTTTCCTTAATTTGACGTATGATGTACAGACAG
TATGGTTTCATAAGACAATAACCAATACTCATGATGTCATGATTTTTCCAGTTTTTGAACGTTTTGCTCAATATGTCATCTATTTTCCTCGAATGTGA
Protein sequenceShow/hide protein sequence
MTSMFLVRVKNFRPLVDGTSRLAQIARESDIIFTPLSLMLTTSGPSPRFIAMLQVFHQCFTVYSVNIDHRSRISLESLHDALLDCGSSSSMTIHLLENTNLMALRFETPN
HEPQLRHDVVLLPPQEQSIEEIEYSKSLALDPRDLRQKGRCEILGHDGDAVSEFRIVLYPMLFFLNLTYDVQTVWFHKTITNTHDVMIFPVFERFAQYVIYFPRM