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Carg27111 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27111
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-directed RNA polymerase II subunit RPB2
Genome locationCarg_Chr19:4199406..4200624
RNA-Seq ExpressionCarg27111
SyntenyCarg27111
Gene Ontology termsGO:0032774 - RNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016903560.1 PREDICTED: uncharacterized protein LOC103503490 [Cucumis melo]1.3e-1891.53Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG-SSNDSSSATPQ
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S +DSSS TPQ
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG-SSNDSSSATPQ
XP_022156252.1 uncharacterized protein LOC111023182 [Momordica charantia]1.0e-1896.3Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSS
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSN  SS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSS
XP_022931780.1 uncharacterized protein LOC111438056 [Cucurbita moschata]7.4e-2298.28Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSA PQ
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ
XP_022973256.1 uncharacterized protein LOC111471813 [Cucurbita maxima]1.9e-22100Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ
XP_023553989.1 uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo]1.8e-2096.61Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSS-NDSSSATPQ
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSS +DSSSATPQ
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSS-NDSSSATPQ
TrEMBL top hitse value%identityAlignment
A0A1S4E6G4 uncharacterized protein LOC1035034906.3e-1991.53Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG-SSNDSSSATPQ
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S +DSSS TPQ
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG-SSNDSSSATPQ
A0A5A7TAA3 Putative membrane lipoprotein6.3e-1991.53Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG-SSNDSSSATPQ
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S +DSSS TPQ
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG-SSNDSSSATPQ
A0A6J1DRK3 uncharacterized protein LOC1110231824.8e-1996.3Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSS
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSN  SS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSS
A0A6J1F0E3 uncharacterized protein LOC1114380563.6e-2298.28Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSA PQ
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ
A0A6J1I859 uncharacterized protein LOC1114718139.4e-23100Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G17085.1 Putative membrane lipoprotein2.2e-1670.37Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSS
        M+KSF+LIQT+A +G FSA+S WYGFMFGRESARK+LG LI++LRRG SN  S+
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAATCCTTCACTCTGATTCAGACAATTGCGACCGCTGGAGCCTTCTCTGCGATTTCGTTCTGGTATGGATTCATGTTTGGAAGAGAGTCCGCTCGAAAAGACTT
GGGAGATTTGATTCAAGATCTACGCCGCGGAAGCTCCAACGATTCTTCTTCTGCAACTCCTCAGTAG
mRNA sequenceShow/hide mRNA sequence
TGACGTAACTTTATATGGGCCTAAATGGTTAAAGCCCAAACAGATCGACCTCTATCTGGGCCTAAACTGGTGGAAGCCCAAAATTGAAAGAACCTCTCTCTTTCTTCTCT
CCCTCCTCCCGGTGTCAATCGGTGGAGGAATTTCCTGAGAAATTGAAATGGAGAAATCCTTCACTCTGATTCAGACAATTGCGACCGCTGGAGCCTTCTCTGCGATTTCG
TTCTGGTATGGATTCATGTTTGGAAGAGAGTCCGCTCGAAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGCGGAAGCTCCAACGATTCTTCTTCTGCAACTCCTCA
GTAGATCATTTTGAAGTATGGCGGTGACGAAAGAGGCAGCGTTGCAACTTCGGGGCCATGCGGATCGAGTGCTTGTCAAGTTAAGGATTTTCTGCCAAAAGCTTGGATCA
AAGACTCGAAAATTTTCCTTCAATTTGGCGATGTTTCTGTAGAAACGACTTCTTACAAATGCCTCGAAGTTCAGCCGGTCAATTGTTTTCTACGAGTTTCACGTATGGCA
TTACGTTTTTGAATGATATTCCTTTACTTTCTAGAAATTTTCCTTCGGAACTTGTAGATGTCTGGTCCATTTATTTGCCGATATCGATCATTCAGTTCATCTCAAATATT
TTTGGCACAACCAGTAGTGTAAACAGGACTGGCGGCGATTTCCTTTGAAACGGAATTGATGATCCATGTCGTGATGATATCGTTGCGCTGCATTGCCAGGCGGAAGAAAG
ATTTCCCTTCAAAATATTGATAAGAATGTCTAAACATCCCAATCAAAAGTTTAGAGTGCGTCCCATGAGTGATTTGAAATATAAAATTTTAAGACAAAATATTTTCAAAA
TTTCAAA
Protein sequenceShow/hide protein sequence
MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNDSSSATPQ