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Carg27166 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27166
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionlysine-rich arabinogalactan protein 19-like
Genome locationCarg_Chr04:14172736..14173164
RNA-Seq ExpressionCarg27166
SyntenyCarg27166
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
InterPro domainsIPR038793 - Lysine-rich arabinogalactan protein 19


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032487.1 hypothetical protein SDJN02_06535, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-44100Show/hide
Query:  MLAPVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF
        MLAPVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF
Subjt:  MLAPVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF

XP_022930065.1 lysine-rich arabinogalactan protein 19-like [Cucurbita moschata]5.0e-4497.89Show/hide
Query:  MLAPVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF
        MLAPVAVPELAPAPAPGKHKHRRRHKHKKH+APAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWAR+VLGFIIVVASTAFNF
Subjt:  MLAPVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF

XP_022974214.1 lysine-rich arabinogalactan protein 19-like [Cucurbita maxima]2.0e-4094.74Show/hide
Query:  MLAPVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF
        MLAPVAVPELAPAPAPGKHKHRRRHKHKKH+APAPAPAVPSPPAPPTVVDSQ DSTAPAPSPNLNGGDPMKEKVG WARIVLGFIIVVA+TAF+F
Subjt:  MLAPVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF

XP_023514677.1 lysine-rich arabinogalactan protein 19-like [Cucurbita pepo subsp. pepo]3.6e-4294.74Show/hide
Query:  MLAPVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF
        MLAPVAVPELAPAPAPGKHKHRRRHKHKKH+APAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMK+KVG WARIVLGFIIVVA+T FNF
Subjt:  MLAPVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF

XP_038875574.1 lysine-rich arabinogalactan protein 19-like [Benincasa hispida]1.1e-3383.87Show/hide
Query:  APVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF
        AP+AVPELAPAPAPGKHKHRR HKHKKH+APAPAP VPSPPAPPTVVDSQ DSTAPAPSPNLNGGDPMK KV   +R+VLGFI +VA+T FNF
Subjt:  APVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF

TrEMBL top hitse value%identityAlignment
A0A0A0LHJ4 Uncharacterized protein1.1e-3381.52Show/hide
Query:  APVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFN
        APVA PE +PAPAPGKHKHRRRHKHKKH+APAPAP VPSPPAPPTVVDSQ DSTAPAPSP+LNGGDP+K KVGRW+++ LGFI +VA+T FN
Subjt:  APVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFN

A0A1S3C506 lysine-rich arabinogalactan protein 193.7e-3280.43Show/hide
Query:  APVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFN
        APVA PEL+PAPAPGKHKHRRRHKHKKH+APAPAP VPSPPAPPTVVDSQ DSTAPAPSP+L+ GDPMK KVG W ++ LGFI +VA+T FN
Subjt:  APVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFN

A0A6J1DYJ7 lysine-rich arabinogalactan protein 192.0e-3076.84Show/hide
Query:  APVAVPEL--APAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF
        APVA P L  +PAPAPGKH+H+R HKHKKH APAPAP +PSPPAPPTVVDSQ DSTAPAPSPNLNGGDPM+ KV  W R+VLGFII+VA+T+ NF
Subjt:  APVAVPEL--APAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF

A0A6J1EVZ4 lysine-rich arabinogalactan protein 19-like2.4e-4497.89Show/hide
Query:  MLAPVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF
        MLAPVAVPELAPAPAPGKHKHRRRHKHKKH+APAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWAR+VLGFIIVVASTAFNF
Subjt:  MLAPVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF

A0A6J1IGY8 lysine-rich arabinogalactan protein 19-like9.6e-4194.74Show/hide
Query:  MLAPVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF
        MLAPVAVPELAPAPAPGKHKHRRRHKHKKH+APAPAPAVPSPPAPPTVVDSQ DSTAPAPSPNLNGGDPMKEKVG WARIVLGFIIVVA+TAF+F
Subjt:  MLAPVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF

SwissProt top hitse value%identityAlignment
Q9S740 Lysine-rich arabinogalactan protein 192.3e-1552.08Show/hide
Query:  PVAVP---ELAPAPAPGKHKHRRRHKHKK-HEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGR---WARIVLGFIIVVASTA
        PV  P    L PAPAP   KH+R+HKHK+ H APAPAP  PSPP+PP + D QD  TAPAPSPN NGG+ + +  GR   W    L  + ++A TA
Subjt:  PVAVP---ELAPAPAPGKHKHRRRHKHKK-HEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGR---WARIVLGFIIVVASTA

Arabidopsis top hitse value%identityAlignment
AT1G68725.1 arabinogalactan protein 191.6e-1652.08Show/hide
Query:  PVAVP---ELAPAPAPGKHKHRRRHKHKK-HEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGR---WARIVLGFIIVVASTA
        PV  P    L PAPAP   KH+R+HKHK+ H APAPAP  PSPP+PP + D QD  TAPAPSPN NGG+ + +  GR   W    L  + ++A TA
Subjt:  PVAVP---ELAPAPAPGKHKHRRRHKHKK-HEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGR---WARIVLGFIIVVASTA

AT4G37450.1 arabinogalactan protein 188.4e-0546.27Show/hide
Query:  APVAVPEL-APAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDS-QDDSTAPAPSPNLNGG
        APVA P    PAPAP KHK   +   K   APAPAP +  PPAPPT       D+ +P PS +   G
Subjt:  APVAVPEL-APAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDS-QDDSTAPAPSPNLNGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGCTCCGGTTGCAGTGCCAGAGTTAGCCCCTGCACCAGCTCCGGGAAAGCATAAGCATAGAAGGCGTCACAAACATAAAAAGCATGAAGCCCCAGCCCCAGCCCC
AGCCGTCCCAAGCCCACCAGCACCACCTACAGTGGTGGATTCACAGGATGATAGTACAGCACCAGCGCCATCACCAAATCTGAACGGAGGAGACCCAATGAAAGAAAAGG
TGGGAAGATGGGCCAGAATTGTATTGGGATTCATAATTGTGGTTGCTTCCACAGCCTTCAATTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTAGCTCCGGTTGCAGTGCCAGAGTTAGCCCCTGCACCAGCTCCGGGAAAGCATAAGCATAGAAGGCGTCACAAACATAAAAAGCATGAAGCCCCAGCCCCAGCCCC
AGCCGTCCCAAGCCCACCAGCACCACCTACAGTGGTGGATTCACAGGATGATAGTACAGCACCAGCGCCATCACCAAATCTGAACGGAGGAGACCCAATGAAAGAAAAGG
TGGGAAGATGGGCCAGAATTGTATTGGGATTCATAATTGTGGTTGCTTCCACAGCCTTCAATTTCTAGTTTTGAAGAGAATTATAATCCA
Protein sequenceShow/hide protein sequence
MLAPVAVPELAPAPAPGKHKHRRRHKHKKHEAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARIVLGFIIVVASTAFNF