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Carg27171 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27171
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionphotosystem I reaction center subunit IV, chloroplastic-like
Genome locationCarg_Chr05:5152074..5152654
RNA-Seq ExpressionCarg27171
SyntenyCarg27171
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
InterPro domainsIPR003375 - Photosystem I PsaE, reaction centre subunit IV
IPR008990 - Electron transport accessory-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598956.1 Photosystem I reaction center subunit IV, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.2e-43100Show/hide
Query:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ
        MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ
Subjt:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ

KAG7029913.1 Photosystem I reaction center subunit IV A, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]5.4e-44100Show/hide
Query:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ
        MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ
Subjt:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ

Query:  V
        V
Subjt:  V

XP_022929705.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata]8.0e-4090.57Show/hide
Query:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADE------AAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGS
        MAASNLSCIASGVLIPSPPTISSSSSFR SSFAIFPNNSRSSRFVIRA ADE      AAPATAAATEEPKPKPPPIGPKRGAKVKILRKES+WYKD+GS
Subjt:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADE------AAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGS

Query:  VVTVDQ
        VVTVDQ
Subjt:  VVTVDQ

XP_022997580.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima]8.9e-3989.62Show/hide
Query:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADE------AAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGS
        MAASNLSCIASGVLIPSPPTISSSSS R SSFAIFPN+SRSSRFVIRA ADE      AAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKD+GS
Subjt:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADE------AAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGS

Query:  VVTVDQ
        VVTVDQ
Subjt:  VVTVDQ

XP_023546723.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo subsp. pepo]8.9e-3988.68Show/hide
Query:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADE------AAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGS
        MAASNLSCIASGVLIPSPPTISSSSSFR SSFAIFPNNSRSSRFVIRAT DE      AAP TAAATEEPKPKPPPIGPKRGAKVKILRKESYW+KD+G 
Subjt:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADE------AAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGS

Query:  VVTVDQ
        VVTVDQ
Subjt:  VVTVDQ

TrEMBL top hitse value%identityAlignment
A0A0A0LJQ1 Uncharacterized protein2.6e-2877.27Show/hide
Query:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNN----SRSSRFVIRATADEAAP------ATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYK
        MAASNLSCIASGV+IPS  TISSSSS R SS A FP N    SRSSR VIRA +DEAAP       TAA TEEPKPKP PIGPKRGAKVKILRKESYWYK
Subjt:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNN----SRSSRFVIRATADEAAP------ATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYK

Query:  DIGSVVTVDQ
        D+GSVVTVDQ
Subjt:  DIGSVVTVDQ

A0A1S3B3T3 photosystem I reaction center subunit IV, chloroplastic-like9.9e-2878.38Show/hide
Query:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNN----SRSSRFVIRATA-DEAAP-----ATAAAT-EEPKPKPPPIGPKRGAKVKILRKESYWY
        MAASNLSCIASGV+IPS  TISSSSS R SS A FP N    SRSSR VIRA A DEAAP     A AAAT EEPKPKP PIGPKRGAKVKILRKESYWY
Subjt:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNN----SRSSRFVIRATA-DEAAP-----ATAAAT-EEPKPKPPPIGPKRGAKVKILRKESYWY

Query:  KDIGSVVTVDQ
        KD+GSVVTVDQ
Subjt:  KDIGSVVTVDQ

A0A6J1EV28 photosystem I reaction center subunit IV, chloroplastic-like3.9e-4090.57Show/hide
Query:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADE------AAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGS
        MAASNLSCIASGVLIPSPPTISSSSSFR SSFAIFPNNSRSSRFVIRA ADE      AAPATAAATEEPKPKPPPIGPKRGAKVKILRKES+WYKD+GS
Subjt:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADE------AAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGS

Query:  VVTVDQ
        VVTVDQ
Subjt:  VVTVDQ

A0A6J1HLT8 photosystem I reaction center subunit IV, chloroplastic-like8.4e-2772.97Show/hide
Query:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNN----SRSSRFVIRATADEAA--PATAAAT-----EEPKPKPPPIGPKRGAKVKILRKESYWY
        MAASNLSCIASGV+IPS PTISSSS  R SS A FP N    SRS R V+RA ADEAA  P  AAAT     E PKPKP PIGPKRG KVKILR+ESYWY
Subjt:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNN----SRSSRFVIRATADEAA--PATAAAT-----EEPKPKPPPIGPKRGAKVKILRKESYWY

Query:  KDIGSVVTVDQ
        KD+GSVVTVDQ
Subjt:  KDIGSVVTVDQ

A0A6J1KA35 photosystem I reaction center subunit IV, chloroplastic-like4.3e-3989.62Show/hide
Query:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADE------AAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGS
        MAASNLSCIASGVLIPSPPTISSSSS R SSFAIFPN+SRSSRFVIRA ADE      AAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKD+GS
Subjt:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADE------AAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGS

Query:  VVTVDQ
        VVTVDQ
Subjt:  VVTVDQ

SwissProt top hitse value%identityAlignment
P12354 Photosystem I reaction center subunit IV, chloroplastic7.8e-1456.67Show/hide
Query:  TISSSSSFRSSSFAIFPNNS----RSSRFVIRATADEAAPATAAAT---EEPK--PKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ
        +I+SS + R     + PN +    RS+R V+RA A+EAA A AAA+   E PK   KPPPIGPKRG+KV+I+RKESYWYK +GSVV VDQ
Subjt:  TISSSSSFRSSSFAIFPNNS----RSSRFVIRATADEAAPATAAAT---EEPK--PKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ

Q41228 Photosystem I reaction center subunit IV A, chloroplastic3.2e-1550Show/hide
Query:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNN--SRSSRFVIRATADEAAPATAAATEEP------KPKPPPIGPKRGAKVKILRKESYWYKDI
        MA+ N++  AS  L+ +P   S++++ R++       N  S + R V+RA A+EAAP  AAAT EP        KPPPIGPKRG KV+ILRKESYWYK  
Subjt:  MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNN--SRSSRFVIRATADEAAPATAAATEEP------KPKPPPIGPKRGAKVKILRKESYWYKDI

Query:  GSVVTVDQ
        GSVV  DQ
Subjt:  GSVVTVDQ

Q41229 Photosystem I reaction center subunit IV B, chloroplastic3.2e-1549.09Show/hide
Query:  MAASNLSCIASGVLIPSPPTISSSSSFRSSS--FAIFPNNSRSS--RFVIRATADEAAPATAAATEEPK------PKPPPIGPKRGAKVKILRKESYWYK
        MA+S+++  ASG ++ +P   +S+++ R+S   F+   NN+ ++  R V+RA A+EAAP  A AT E +       KPPPIGPKRG KV++LRKESYWYK
Subjt:  MAASNLSCIASGVLIPSPPTISSSSSFRSSS--FAIFPNNSRSS--RFVIRATADEAAPATAAATEEPK------PKPPPIGPKRGAKVKILRKESYWYK

Query:  DIGSVVTVDQ
         +GSVV VDQ
Subjt:  DIGSVVTVDQ

Q9S714 Photosystem I reaction center subunit IV B, chloroplastic8.7e-1345.45Show/hide
Query:  LSCIASGVLIPS--PPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATA-------------AATEEPKPKPPPIGPKRGAKVKILRKESYWYK
        ++  A+G ++ +  P  I   SS  ++  +  P  S  SR V+RA A++  PATA             A     K KPPPIGPKRG+KVKILRKESYWYK
Subjt:  LSCIASGVLIPS--PPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATA-------------AATEEPKPKPPPIGPKRGAKVKILRKESYWYK

Query:  DIGSVVTVDQ
        ++GSVV VDQ
Subjt:  DIGSVVTVDQ

Q9S831 Photosystem I reaction center subunit IV A, chloroplastic2.7e-1446.46Show/hide
Query:  LIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAATEEP------------KPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ
        ++P+  T  + +S   SS +  P  +  SR V+RA A++ APA++++ + P            KPKPPPIGPKRG+KVKILR+ESYW+K++GSVV VDQ
Subjt:  LIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAATEEP------------KPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ

Arabidopsis top hitse value%identityAlignment
AT2G20260.1 photosystem I subunit E-26.2e-1445.45Show/hide
Query:  LSCIASGVLIPS--PPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATA-------------AATEEPKPKPPPIGPKRGAKVKILRKESYWYK
        ++  A+G ++ +  P  I   SS  ++  +  P  S  SR V+RA A++  PATA             A     K KPPPIGPKRG+KVKILRKESYWYK
Subjt:  LSCIASGVLIPS--PPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATA-------------AATEEPKPKPPPIGPKRGAKVKILRKESYWYK

Query:  DIGSVVTVDQ
        ++GSVV VDQ
Subjt:  DIGSVVTVDQ

AT4G28750.1 Photosystem I reaction centre subunit IV / PsaE protein1.9e-1546.46Show/hide
Query:  LIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAATEEP------------KPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ
        ++P+  T  + +S   SS +  P  +  SR V+RA A++ APA++++ + P            KPKPPPIGPKRG+KVKILR+ESYW+K++GSVV VDQ
Subjt:  LIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAATEEP------------KPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCTCTAACCTTTCATGCATAGCTTCTGGAGTGCTCATTCCATCTCCACCCACCATATCATCATCCTCCTCTTTTAGGTCATCTTCTTTCGCCATCTTCCCCAA
CAATTCTAGATCATCTAGATTCGTTATCCGTGCCACTGCGGACGAAGCTGCTCCTGCCACCGCCGCGGCTACCGAAGAGCCCAAGCCTAAACCTCCCCCTATTGGTCCCA
AAAGAGGTGCCAAGGTAAAGATTCTAAGGAAAGAATCCTACTGGTACAAAGATATTGGATCGGTTGTAACAGTTGACCAGGTTTGA
mRNA sequenceShow/hide mRNA sequence
AATCTGTGATGTTATCATTATTCAAAGCATTGATACTCAAACCCCAAAGCTGCTTTGAGCCAGACAAAGGCCATGGCTGCCTCTAACCTTTCATGCATAGCTTCTGGAGT
GCTCATTCCATCTCCACCCACCATATCATCATCCTCCTCTTTTAGGTCATCTTCTTTCGCCATCTTCCCCAACAATTCTAGATCATCTAGATTCGTTATCCGTGCCACTG
CGGACGAAGCTGCTCCTGCCACCGCCGCGGCTACCGAAGAGCCCAAGCCTAAACCTCCCCCTATTGGTCCCAAAAGAGGTGCCAAGGTAAAGATTCTAAGGAAAGAATCC
TACTGGTACAAAGATATTGGATCGGTTGTAACAGTTGACCAGGTTTGACCCTTGAACTTTTGTTCATTTATGATTTTTCTTTCTCGTGCGTGCAAATAGAAACTTTTTGG
TTATATTAATTATGAGAATCATCGTCTGAAAGATGATTTCTCTGGAAAA
Protein sequenceShow/hide protein sequence
MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQV