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Carg27173 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27173
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRegulator of nonsense transcripts UPF3 isoform X1
Genome locationCarg_Chr09:12132485..12133396
RNA-Seq ExpressionCarg27173
SyntenyCarg27173
Gene Ontology termsGO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039239.1 regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa]7.0e-1992.45Show/hide
Query:  MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCK
        +ASRQDYGSSNFQG+YLHSEDLMHILRR HHVKWRYALEAVGNSNRF ELDCK
Subjt:  MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCK
KAG6607495.1 hypothetical protein SDJN03_00837, partial [Cucurbita argyrosperma subsp. sororia]2.9e-0492Show/hide
Query:  HHVKWRYALEAVGNSNRFHELDCKM
        HHVKWRYALEAVGNSNRF ELDCK+
Subjt:  HHVKWRYALEAVGNSNRFHELDCKM
KAG7025201.1 hypothetical protein SDJN02_14024, partial [Cucurbita argyrosperma subsp. argyrosperma]5.7e-45100Show/hide
Query:  MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCKMQLFRIRVVTKHRSVLWLKTEYAFYGFLIERVRSLEFM
        MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCKMQLFRIRVVTKHRSVLWLKTEYAFYGFLIERVRSLEFM
Subjt:  MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCKMQLFRIRVVTKHRSVLWLKTEYAFYGFLIERVRSLEFM
KAG7037154.1 Regulator of nonsense transcripts UPF3, partial [Cucurbita argyrosperma subsp. argyrosperma]2.9e-0492Show/hide
Query:  HHVKWRYALEAVGNSNRFHELDCKM
        HHVKWRYALEAVGNSNRF ELDCK+
Subjt:  HHVKWRYALEAVGNSNRFHELDCKM
TYK00427.1 regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa]7.0e-1992.45Show/hide
Query:  MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCK
        +ASRQDYGSSNFQG+YLHSEDLMHILRR HHVKWRYALEAVGNSNRF ELDCK
Subjt:  MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCK
TrEMBL top hitse value%identityAlignment
A0A5A7TD91 Regulator of nonsense transcripts UPF3 isoform X13.4e-1992.45Show/hide
Query:  MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCK
        +ASRQDYGSSNFQG+YLHSEDLMHILRR HHVKWRYALEAVGNSNRF ELDCK
Subjt:  MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCK
A0A5D3BML0 Regulator of nonsense transcripts UPF3 isoform X13.4e-1992.45Show/hide
Query:  MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCK
        +ASRQDYGSSNFQG+YLHSEDLMHILRR HHVKWRYALEAVGNSNRF ELDCK
Subjt:  MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGAATATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATCATGTAAAATGGAGATATGC
CCTGGAAGCAGTTGGTAACAGTAATAGGTTTCATGAACTGGATTGCAAGATGCAATTGTTTCGTATACGGGTGGTTACAAAACACAGAAGTGTTCTCTGGTTGAAGACCG
AATATGCATTCTATGGATTTCTGATTGAGAGAGTGAGAAGCCTAGAGTTTATG
mRNA sequenceShow/hide mRNA sequence
ATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGAATATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATCATGTAAAATGGAGATATGC
CCTGGAAGCAGTTGGTAACAGTAATAGGTTTCATGAACTGGATTGCAAGATGCAATTGTTTCGTATACGGGTGGTTACAAAACACAGAAGTGTTCTCTGGTTGAAGACCG
AATATGCATTCTATGGATTTCTGATTGAGAGAGTGAGAAGCCTAGAGTTTATG
Protein sequenceShow/hide protein sequence
MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCKMQLFRIRVVTKHRSVLWLKTEYAFYGFLIERVRSLEFM