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Carg27205 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27205
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpentatricopeptide repeat-containing protein At4g21300-like
Genome locationCarg_Chr02:1436481..1441516
RNA-Seq ExpressionCarg27205
SyntenyCarg27205
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035050.1 hypothetical protein SDJN02_01844, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-76100Show/hide
Query:  SLTFNFFRHGSADFSFKWSSIHTYVRCSTLSAFSLVHNAEYCVCANALLTRYGKARMWVHGLELNSGIVEIAWHVFNFAGLGQKEKGYSSMDFYYELPSF
        SLTFNFFRHGSADFSFKWSSIHTYVRCSTLSAFSLVHNAEYCVCANALLTRYGKARMWVHGLELNSGIVEIAWHVFNFAGLGQKEKGYSSMDFYYELPSF
Subjt:  SLTFNFFRHGSADFSFKWSSIHTYVRCSTLSAFSLVHNAEYCVCANALLTRYGKARMWVHGLELNSGIVEIAWHVFNFAGLGQKEKGYSSMDFYYELPSF

Query:  SNAGYIFSMPIKPVISTTTSHMRLTSASQTARIEMLVSRFVQQLAIE
        SNAGYIFSMPIKPVISTTTSHMRLTSASQTARIEMLVSRFVQQLAIE
Subjt:  SNAGYIFSMPIKPVISTTTSHMRLTSASQTARIEMLVSRFVQQLAIE
TrEMBL top hitse value%identityAlignment
A0A6J1CYG8 pentatricopeptide repeat-containing protein At4g21300-like8.5e-0429.33Show/hide
Query:  SLTFN-----FFRHGSAD-----FSFKWSS---IHTYVRCSTLSAFSLVHNAEY----------------------------------------------
        SLTFN     F R+GSAD     FSF  S+   I +Y  CSTLSA SLV N  +                                              
Subjt:  SLTFN-----FFRHGSAD-----FSFKWSS---IHTYVRCSTLSAFSLVHNAEY----------------------------------------------

Query:  -CVCANALLTRYGKARMWVHGLEL-------------------------------------------------------------NSGIVEIAWHVFNFA
          VCANALL  YG+A+MWV GLEL                                                              SG+VE AW+VFNFA
Subjt:  -CVCANALLTRYGKARMWVHGLEL-------------------------------------------------------------NSGIVEIAWHVFNFA

Query:  GLGQKEKG
        GL QKE G
Subjt:  GLGQKEKG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTTTAACCTTCAACTTTTTTCGACATGGGTCTGCGGATTTCTCTTTTAAATGGAGTTCTATTCATACGTATGTCCGTTGCAGCACTTTGAGTGCATTTTCGCTTGTTCA
TAATGCGGAATACTGTGTGTGTGCAAATGCACTATTGACTAGATATGGCAAGGCTAGGATGTGGGTGCATGGACTTGAATTGAATAGTGGCATAGTAGAAATAGCATGGC
ATGTATTCAATTTCGCAGGACTTGGACAAAAAGAAAAGGGATATTCTAGTATGGACTTCTATTATGAGCTGCCAAGCTTTTCAAATGCAGGCTACATCTTCAGCATGCCT
ATCAAACCGGTCATCTCGACGACGACATCCCACATGAGGCTAACCTCTGCTAGCCAGACTGCCAGAATTGAAATGCTTGTTTCTCGGTTCGTGCAGCAGCTGGCGATCGA
G
mRNA sequenceShow/hide mRNA sequence
TCTTTAACCTTCAACTTTTTTCGACATGGGTCTGCGGATTTCTCTTTTAAATGGAGTTCTATTCATACGTATGTCCGTTGCAGCACTTTGAGTGCATTTTCGCTTGTTCA
TAATGCGGAATACTGTGTGTGTGCAAATGCACTATTGACTAGATATGGCAAGGCTAGGATGTGGGTGCATGGACTTGAATTGAATAGTGGCATAGTAGAAATAGCATGGC
ATGTATTCAATTTCGCAGGACTTGGACAAAAAGAAAAGGGATATTCTAGTATGGACTTCTATTATGAGCTGCCAAGCTTTTCAAATGCAGGCTACATCTTCAGCATGCCT
ATCAAACCGGTCATCTCGACGACGACATCCCACATGAGGCTAACCTCTGCTAGCCAGACTGCCAGAATTGAAATGCTTGTTTCTCGGTTCGTGCAGCAGCTGGCGATCGA
G
Protein sequenceShow/hide protein sequence
SLTFNFFRHGSADFSFKWSSIHTYVRCSTLSAFSLVHNAEYCVCANALLTRYGKARMWVHGLELNSGIVEIAWHVFNFAGLGQKEKGYSSMDFYYELPSFSNAGYIFSMP
IKPVISTTTSHMRLTSASQTARIEMLVSRFVQQLAIE