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Carg27219 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27219
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRNA-binding protein Musashi homolog 1
Genome locationCarg_Chr20:8891562..8892116
RNA-Seq ExpressionCarg27219
SyntenyCarg27219
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571306.1 Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia]8.3e-34100Show/hide
Query:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
        VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
Subjt:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY

KAG7011089.1 hypothetical protein SDJN02_27887, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-34100Show/hide
Query:  MVAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
        MVAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
Subjt:  MVAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY

XP_022932294.1 heterogeneous nuclear ribonucleoprotein D0-like [Cucurbita moschata]8.3e-34100Show/hide
Query:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
        VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
Subjt:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY

XP_022973186.1 heterogeneous nuclear ribonucleoprotein D-like-B isoform X1 [Cucurbita maxima]8.3e-34100Show/hide
Query:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
        VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
Subjt:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY

XP_022973187.1 heterogeneous nuclear ribonucleoprotein 1-like isoform X2 [Cucurbita maxima]8.3e-34100Show/hide
Query:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
        VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
Subjt:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY

TrEMBL top hitse value%identityAlignment
A0A0A0LMN9 Uncharacterized protein7.9e-3090.67Show/hide
Query:  VAIDSATPLDDE-AGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
        VAIDSATPLDD  AGAGA+GASG+FMMNSAA+SFGGY GPMRTYGRMYGSLDFDDWGYGIGGGRPSR DWRYRPY
Subjt:  VAIDSATPLDDE-AGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY

A0A1S3C728 RNA-binding protein Musashi homolog 17.9e-3090.67Show/hide
Query:  VAIDSATPLDDE-AGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
        VAIDSATPLDD  AGAGA+GASG+FMMNSAA+SFGGY GPMRTYGRMYGSLDFDDWGYGIGGGRPSR DWRYRPY
Subjt:  VAIDSATPLDDE-AGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY

A0A6J1EWL0 heterogeneous nuclear ribonucleoprotein D0-like4.0e-34100Show/hide
Query:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
        VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
Subjt:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY

A0A6J1I6V1 heterogeneous nuclear ribonucleoprotein 1-like isoform X24.0e-34100Show/hide
Query:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
        VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
Subjt:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY

A0A6J1I7Z8 heterogeneous nuclear ribonucleoprotein D-like-B isoform X14.0e-34100Show/hide
Query:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
        VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
Subjt:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G36960.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.0e-1859.46Show/hide
Query:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
        VAIDSATPLD+   AG +  + S + +S  E FGGY GPMR +GRMYG +  DDWGYG+   RPSR D RYRPY
Subjt:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY

AT4G36960.2 RNA-binding (RRM/RBD/RNP motifs) family protein4.0e-1859.46Show/hide
Query:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY
        VAIDSATPLD+   AG +  + S + +S  E FGGY GPMR +GRMYG +  DDWGYG+   RPSR D RYRPY
Subjt:  VAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGCTATCGATTCAGCCACTCCTCTTGATGATGAAGCTGGAGCTGGAGCAGCTGGAGCAAGTGGAAGTTTTATGATGAACAGCGCCGCAGAATCGTTCGGTGGCTA
TGCGGGACCTATGAGGACTTATGGAAGGATGTATGGAAGCCTGGATTTCGATGATTGGGGTTATGGAATTGGTGGAGGAAGGCCATCTAGAGGAGACTGGAGGTATCGGC
CATACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGCTATCGATTCAGCCACTCCTCTTGATGATGAAGCTGGAGCTGGAGCAGCTGGAGCAAGTGGAAGTTTTATGATGAACAGCGCCGCAGAATCGTTCGGTGGCTA
TGCGGGACCTATGAGGACTTATGGAAGGATGTATGGAAGCCTGGATTTCGATGATTGGGGTTATGGAATTGGTGGAGGAAGGCCATCTAGAGGAGACTGGAGGTATCGGC
CATACTGA
Protein sequenceShow/hide protein sequence
MVAIDSATPLDDEAGAGAAGASGSFMMNSAAESFGGYAGPMRTYGRMYGSLDFDDWGYGIGGGRPSRGDWRYRPY