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Carg27228 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27228
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPhotosystem II protein D1
Genome locationCarg_Chr18:6573631..6574499
RNA-Seq ExpressionCarg27228
SyntenyCarg27228
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009635 - response to herbicide (biological process)
GO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR038860 - Uncharacterized protein ycf72


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBG97133.1 hypothetical protein Prudu_006154 [Prunus dulcis]2.8e-6197.46Show/hide
Query:  DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS
        DNPKGLRVFFY+LGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS
Subjt:  DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS

Query:  MLCMAVPKGISVEVDSSY
        MLCMAVPKGISVEVDSS+
Subjt:  MLCMAVPKGISVEVDSSY

KAF1855826.1 hypothetical protein Lal_00045189 [Lupinus albus]8.0e-6197.46Show/hide
Query:  DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS
        DNPK LRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS
Subjt:  DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS

Query:  MLCMAVPKGISVEVDSSY
        MLCMAVPKGISVEVDSS+
Subjt:  MLCMAVPKGISVEVDSSY

KAF1876810.1 hypothetical protein Lal_00035372 [Lupinus albus]7.5e-5994.17Show/hide
Query:  DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS
        DNPK LRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS
Subjt:  DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS

Query:  MLCMAVPKGISVEVDSSYQS
        MLCMAVPKGISVE  S++ S
Subjt:  MLCMAVPKGISVEVDSSYQS

KAF4348554.1 hypothetical protein F8388_000233 [Cannabis sativa]1.7e-5885.29Show/hide
Query:  DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS
        DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQ LDPALPKLFWFTP FPTCPTVAEQFL IKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS
Subjt:  DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS

Query:  MLCMAVPKGISVEVDSSYQSKPLPKLYKLLPKHTAF
        MLCMAVPKGISVEV         P L+    +H AF
Subjt:  MLCMAVPKGISVEVDSSYQSKPLPKLYKLLPKHTAF

KAG7012670.1 putative protein ycf72, partial [Cucurbita argyrosperma subsp. argyrosperma]8.8e-92100Show/hide
Query:  MSLAAVKKSKEIVQPSPVPSFTQSPILSNLDNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNF
        MSLAAVKKSKEIVQPSPVPSFTQSPILSNLDNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNF
Subjt:  MSLAAVKKSKEIVQPSPVPSFTQSPILSNLDNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNF

Query:  NVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSYQSKPLPKLYKLLPKHTAFWM
        NVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSYQSKPLPKLYKLLPKHTAFWM
Subjt:  NVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSYQSKPLPKLYKLLPKHTAFWM

TrEMBL top hitse value%identityAlignment
A0A4S8I4I1 Photosystem II protein D18.4e-5685.94Show/hide
Query:  LSNLDNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFP
        LS  DNPKGL VFFY+LG S H PHGDGLQGRLPSQHLDPALPKLFWFTP  PTCPTVA+QFLDIKRTSP+GN NVAD PSFAISFATAPAALANCPPFP
Subjt:  LSNLDNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFP

Query:  SVISMLCMAVPKGISVEVDSSYQSKPLP
        SVISMLCMAVPKGISVEVDSS+ S   P
Subjt:  SVISMLCMAVPKGISVEVDSSYQSKPLP

A0A4Y1QZ52 Uncharacterized protein ycf721.3e-6197.46Show/hide
Query:  DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS
        DNPKGLRVFFY+LGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS
Subjt:  DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS

Query:  MLCMAVPKGISVEVDSSY
        MLCMAVPKGISVEVDSS+
Subjt:  MLCMAVPKGISVEVDSSY

A0A6A5MQL3 Uncharacterized protein ycf723.9e-6197.46Show/hide
Query:  DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS
        DNPK LRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS
Subjt:  DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS

Query:  MLCMAVPKGISVEVDSSY
        MLCMAVPKGISVEVDSS+
Subjt:  MLCMAVPKGISVEVDSSY

A0A6A5N0B0 Uncharacterized protein ycf723.6e-5994.17Show/hide
Query:  DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS
        DNPK LRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS
Subjt:  DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS

Query:  MLCMAVPKGISVEVDSSYQS
        MLCMAVPKGISVE  S++ S
Subjt:  MLCMAVPKGISVEVDSSYQS

A0A7J6DR28 Uncharacterized protein ycf728.1e-5985.29Show/hide
Query:  DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS
        DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQ LDPALPKLFWFTP FPTCPTVAEQFL IKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS
Subjt:  DNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVIS

Query:  MLCMAVPKGISVEVDSSYQSKPLPKLYKLLPKHTAF
        MLCMAVPKGISVEV         P L+    +H AF
Subjt:  MLCMAVPKGISVEVDSSYQSKPLPKLYKLLPKHTAF

SwissProt top hitse value%identityAlignment
P0C308 Uncharacterized protein ycf726.6e-4284.85Show/hide
Query:  GRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSYQSK-PLP
        GRLPSQHLDPALPKLFWFTP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSS+ SK P P
Subjt:  GRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSYQSK-PLP

P0C309 Uncharacterized protein ycf726.6e-4284.85Show/hide
Query:  GRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSYQSK-PLP
        GRLPSQHLDPALPKLFWFTP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSS+ SK P P
Subjt:  GRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSYQSK-PLP

Q36996 Uncharacterized protein ycf726.6e-4284.85Show/hide
Query:  GRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSYQSK-PLP
        GRLPSQHLDPALPKLFWFTP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSS+ SK P P
Subjt:  GRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSYQSK-PLP

Q6ENC9 Uncharacterized protein ycf726.6e-4284.85Show/hide
Query:  GRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSYQSK-PLP
        GRLPSQHLDPALPKLFWFTP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSS+ SK P P
Subjt:  GRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSYQSK-PLP

Q6L3B8 Uncharacterized protein ycf722.5e-4183.84Show/hide
Query:  GRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSYQSK-PLP
        GRLPSQHLDPALPKLFWFTP  PTCPTVA+QF D KRTSP+GN  VA+ PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSS+ SK P P
Subjt:  GRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSYQSK-PLP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTAGCAGCAGTAAAGAAAAGCAAAGAGATAGTTCAACCTTCACCTGTCCCTTCTTTCACTCAATCACCTATCCTCTCCAATTTGGATAACCCCAAGGGGTTGCG
GGTTTTTTTCTACCAATTGGGGCCCTCCCTTCACCACCCCCATGGGGATGGTCTACAGGGACGCTTACCTAGCCAACATTTAGATCCGGCTCTACCCAAACTTTTCTGGT
TTACCCCAGCATTCCCCACTTGTCCGACTGTTGCTGAGCAATTTTTGGATATCAAACGGACCTCCCCAGAAGGTAATTTTAATGTGGCCGATTTCCCCTCTTTTGCAATC
AGTTTCGCTACAGCACCTGCTGCTCTAGCTAATTGTCCCCCCTTCCCAAGTGTGATTTCTATGTTATGTATGGCCGTGCCTAAGGGCATATCGGTTGAAGTAGATTCTTC
TTATCAATCAAAACCCCTTCCCAAACTGTACAAGCTTCTTCCAAAGCATACGGCTTTCTGGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCATTAGCAGCAGTAAAGAAAAGCAAAGAGATAGTTCAACCTTCACCTGTCCCTTCTTTCACTCAATCACCTATCCTCTCCAATTTGGATAACCCCAAGGGGTTGCG
GGTTTTTTTCTACCAATTGGGGCCCTCCCTTCACCACCCCCATGGGGATGGTCTACAGGGACGCTTACCTAGCCAACATTTAGATCCGGCTCTACCCAAACTTTTCTGGT
TTACCCCAGCATTCCCCACTTGTCCGACTGTTGCTGAGCAATTTTTGGATATCAAACGGACCTCCCCAGAAGGTAATTTTAATGTGGCCGATTTCCCCTCTTTTGCAATC
AGTTTCGCTACAGCACCTGCTGCTCTAGCTAATTGTCCCCCCTTCCCAAGTGTGATTTCTATGTTATGTATGGCCGTGCCTAAGGGCATATCGGTTGAAGTAGATTCTTC
TTATCAATCAAAACCCCTTCCCAAACTGTACAAGCTTCTTCCAAAGCATACGGCTTTCTGGATGTAG
Protein sequenceShow/hide protein sequence
MSLAAVKKSKEIVQPSPVPSFTQSPILSNLDNPKGLRVFFYQLGPSLHHPHGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI
SFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSYQSKPLPKLYKLLPKHTAFWM