; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg27229 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27229
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTrafficking protein particle complex subunit
Genome locationCarg_Chr05:6444840..6446708
RNA-Seq ExpressionCarg27229
SyntenyCarg27229
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0030008 - TRAPP complex (cellular component)
InterPro domainsIPR007233 - Trafficking protein particle complex subunit
IPR011012 - Longin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599171.1 Trafficking protein particle complex subunit 4, partial [Cucurbita argyrosperma subsp. sororia]3.7e-3596.25Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLT   F
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF

KAG7029967.1 Trafficking protein particle complex subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma]7.9e-54100Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAFSTDEECVRTMNQFYNSQEQL
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAFSTDEECVRTMNQFYNSQEQL
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAFSTDEECVRTMNQFYNSQEQL

Query:  CCRIVAL
        CCRIVAL
Subjt:  CCRIVAL

KAG7030109.1 Trafficking protein particle complex subunit 4 [Cucurbita argyrosperma subsp. argyrosperma]3.7e-3596.25Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLT   F
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF

XP_022946574.1 trafficking protein particle complex subunit 4-like [Cucurbita moschata]3.7e-3596.25Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLT   F
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF

XP_023521099.1 trafficking protein particle complex subunit 4-like [Cucurbita pepo subsp. pepo]3.7e-3596.25Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLT   F
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF

TrEMBL top hitse value%identityAlignment
A0A0A0LJ20 Trafficking protein particle complex subunit1.5e-3493.75Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG ELLEADTFDLHCFQSLT   F
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF

A0A5A7TWY1 Trafficking protein particle complex subunit1.5e-3493.75Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG ELLEADTFDLHCFQSLT   F
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF

A0A6J1DUU4 Trafficking protein particle complex subunit8.9e-3595Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSG ELLEADTFDLHCFQSLT   F
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF

A0A6J1G4Q4 Trafficking protein particle complex subunit1.8e-3596.25Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLT   F
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF

A0A6J1KK16 Trafficking protein particle complex subunit1.8e-3596.25Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLT   F
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF

SwissProt top hitse value%identityAlignment
O43041 Transport protein particle subunit trs235.0e-1143.59Show/hide
Query:  IYSLYIINKSGGLIFYKDYGSA-GRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF
        +++L IIN++G LIF +++GS+   +  N+ L +A   H +HAIS Q+SP+ G SG +LLEA TF++H  Q+ T   F
Subjt:  IYSLYIINKSGGLIFYKDYGSA-GRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF

Q2TBL9 Trafficking protein particle complex subunit 45.6e-1055.56Show/hide
Query:  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF
        R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LT   F
Subjt:  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF

Q54UU1 Trafficking protein particle complex subunit 47.0e-1344.87Show/hide
Query:  IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISG-CSGTELLEADTFDLHCFQSLTDQAF
        I S+YI+NK+G LI+  D+G+  ++  N  +R+ S +HS+HAI+  LSP+SG  SG E++E + F L CFQ+ T   F
Subjt:  IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISG-CSGTELLEADTFDLHCFQSLTDQAF

Q69BT7 Trafficking protein particle complex subunit 45.6e-1055.56Show/hide
Query:  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF
        R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LT   F
Subjt:  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF

Q9ES56 Trafficking protein particle complex subunit 45.6e-1055.56Show/hide
Query:  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF
        R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LT   F
Subjt:  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF

Arabidopsis top hitse value%identityAlignment
AT5G02280.1 SNARE-like superfamily protein2.3e-3587.5Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF
        MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVASLWHSMHAISQQLSP++GCSG ELLEADTFDLHCFQSL    F
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACAAACGATAGCTTAAGAGTGGC
GAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCCGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGACCTCCATTGCTTCCAGT
CACTTACTGATCAAGCCTTCTCAACAGATGAAGAGTGTGTCAGGACAATGAACCAATTCTACAATTCTCAAGAGCAGCTCTGTTGCCGGATCGTTGCACTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACAAACGATAGCTTAAGAGTGGC
GAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCCGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGACCTCCATTGCTTCCAGT
CACTTACTGATCAAGCCTTCTCAACAGATGAAGAGTGTGTCAGGACAATGAACCAATTCTACAATTCTCAAGAGCAGCTCTGTTGCCGGATCGTTGCACTATGA
Protein sequenceShow/hide protein sequence
MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAFSTDEECVRTMNQFYNSQEQLCCRIVAL