CuGenDBv2

Gene ID	Carg27247
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Endonuclease III homolog
Genome location	Carg_Chr14:11070870..11071841
RNA-Seq Expression	Carg27247
Synteny	Carg27247
Gene Ontology terms	GO:0006285 - base-excision repair, AP site formation (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0005634 - nucleus (cellular component) GO:0000703 - oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity (molecular function) GO:0003677 - DNA binding (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function) GO:0140078 - class I DNA-(apurinic or apyrimidinic site) endonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6582045.1 Endonuclease III-like 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-62

97.04

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Query:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR
        MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPP   GVQSSNGVSKSETRVFVRRTVKKKAEGQ SGLDLELKDDVKRCCPPDIEDFAFKR
Subjt:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR

Query:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG
        TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG
Subjt:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG

KAG7018475.1 hypothetical protein SDJN02_20343, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.3e-66

100

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Query:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR
        MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR
Subjt:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR

Query:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG
        TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG
Subjt:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG

XP_022955790.1 endonuclease III homolog 1, chloroplastic-like isoform X1 [Cucurbita moschata]

1.1e-65

99.26

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Query:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR
        MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQ SGLDLELKDDVKRCCPPDIEDFAFKR
Subjt:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR

Query:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG
        TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG
Subjt:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG

XP_022955791.1 endonuclease III homolog 1, chloroplastic-like isoform X2 [Cucurbita moschata]

1.5e-62

97.04

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Query:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR
        MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPP   GVQSSNGVSKSETRVFVRRTVKKKAEGQ SGLDLELKDDVKRCCPPDIEDFAFKR
Subjt:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR

Query:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG
        TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG
Subjt:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG

XP_023527414.1 endonuclease III homolog 1, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo]

8.1e-64

97.04

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Query:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR
        MFLACPIRNSALSITFARRITCTGMSKRSSSSMPI SNE PPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQ SGLDLELKDDVKRCCPPDIEDFAFKR
Subjt:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR

Query:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG
        TKDSPGSRKSKPPLDTLL RIEDSNPTRQKGVAEG
Subjt:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1GUU3 Endonuclease III homolog

7.4e-63

97.04

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Query:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR
        MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPP   GVQSSNGVSKSETRVFVRRTVKKKAEGQ SGLDLELKDDVKRCCPPDIEDFAFKR
Subjt:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR

Query:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG
        TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG
Subjt:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG

A0A6J1GW15 Endonuclease III homolog

5.5e-66

99.26

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Query:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR
        MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQ SGLDLELKDDVKRCCPPDIEDFAFKR
Subjt:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR

Query:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG
        TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG
Subjt:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG

A0A6J1IPR1 endonuclease III homolog 1, chloroplastic-like isoform X3

1.0e-59

94.07

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Query:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR
        MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNE  PGISGVQSSNGVSKSETRVFVRRTVKKKAEGQ SGLDLELKDD K CC P+IEDFAFKR
Subjt:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR

Query:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG
        TKDSPGSRKSKPPLDTLL RIEDSNPTRQKGVAEG
Subjt:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG

A0A6J1IRV0 Endonuclease III homolog

1.4e-56

91.85

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Query:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR
        MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNE  P   GVQSSNGVSKSETRVFVRRTVKKKAEGQ SGLDLELKDD K CC P+IEDFAFKR
Subjt:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR

Query:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG
        TKDSPGSRKSKPPLDTLL RIEDSNPTRQKGVAEG
Subjt:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG

A0A6J1IUE8 Endonuclease III homolog

1.0e-59

94.07

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Query:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR
        MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNE  PGISGVQSSNGVSKSETRVFVRRTVKKKAEGQ SGLDLELKDD K CC P+IEDFAFKR
Subjt:  MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKR

Query:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG
        TKDSPGSRKSKPPLDTLL RIEDSNPTRQKGVAEG
Subjt:  TKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTTCTTGCTTGTCCTATTCGGAACTCGGCGCTTTCGATTACATTTGCGCGAAGAATTACATGCACTGGCATGTCGAAACGAAGTTCATCTTCCATGCCAATAACCTC
AAACGAATCCCCTCCAGGAATTTCAGGTGTTCAATCTTCCAATGGCGTTTCTAAGTCTGAAACTCGTGTATTCGTGAGGAGAACAGTGAAAAAGAAGGCAGAAGGTCAAT
CTAGCGGGCTTGACCTAGAACTTAAAGACGACGTTAAACGTTGTTGTCCTCCTGATATTGAAGATTTTGCATTCAAAAGAACAAAGGATTCCCCCGGATCAAGGAAGTCT
AAGCCTCCTCTAGATACCCTTCTCCCCAGAATTGAAGATTCTAACCCAACTAGACAAAAAGGCGTTGCAGAAGGA

mRNA sequence

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AGGAGGCTGGACCCTTTTTAAATTGGATTCTTCTACTTCTACCCATTACAATGTTTCTTGCTTGTCCTATTCGGAACTCGGCGCTTTCGATTACATTTGCGCGAAGAATT
ACATGCACTGGCATGTCGAAACGAAGTTCATCTTCCATGCCAATAACCTCAAACGAATCCCCTCCAGGAATTTCAGGTGTTCAATCTTCCAATGGCGTTTCTAAGTCTGA
AACTCGTGTATTCGTGAGGAGAACAGTGAAAAAGAAGGCAGAAGGTCAATCTAGCGGGCTTGACCTAGAACTTAAAGACGACGTTAAACGTTGTTGTCCTCCTGATATTG
AAGATTTTGCATTCAAAAGAACAAAGGATTCCCCCGGATCAAGGAAGTCTAAGCCTCCTCTAGATACCCTTCTCCCCAGAATTGAAGATTCTAACCCAACTAGACAAAAA
GGCGTTGCAGAAGGA

Protein sequence

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MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQSSGLDLELKDDVKRCCPPDIEDFAFKRTKDSPGSRKS
KPPLDTLLPRIEDSNPTRQKGVAEG

Carg27247 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome