; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg27267 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27267
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionextensin
Genome locationCarg_Chr04:16399931..16400347
RNA-Seq ExpressionCarg27267
SyntenyCarg27267
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601837.1 hypothetical protein SDJN03_07070, partial [Cucurbita argyrosperma subsp. sororia]2.1e-6298.55Show/hide
Query:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG
        MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG
Subjt:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG

Query:  PPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM
        PPGDLYPIDQSYNAA+RRLVSAAASAVVGLAV GVLMM
Subjt:  PPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM

KAG7032543.1 hypothetical protein SDJN02_06592, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-63100Show/hide
Query:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG
        MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG
Subjt:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG

Query:  PPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM
        PPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM
Subjt:  PPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM

XP_022953268.1 extensin [Cucurbita moschata]9.2e-6399.28Show/hide
Query:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG
        MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG
Subjt:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG

Query:  PPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM
        PPGDLYPIDQSYNAASRRLVS AASAVVGLAVAGVLMM
Subjt:  PPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM

XP_022989990.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]7.5e-5790.21Show/hide
Query:  MLPFNSLLFLALLLLISPSSSSAAVRRLDD-----TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNF
        MLPFNSLLFL LLLLISPSSSSAAVRRLDD     TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVV+YYS PPPPKKDHKN+DCPPPP+PNF
Subjt:  MLPFNSLLFLALLLLISPSSSSAAVRRLDD-----TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNF

Query:  MYITGPPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM
        MYITGPPGDLYPIDQ+YNAA+RRLVSAAASAV+GLAVAGVLM+
Subjt:  MYITGPPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM

XP_023520933.1 extensin [Cucurbita pepo subsp. pepo]1.1e-5894.2Show/hide
Query:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPS-PPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYIT
        MLPFNSLLFL LLLLISPSSSSAAVRRLDDTP DPTVKCSPCEQNPPS PPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKN+DCPPPP+PNFMYIT
Subjt:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPS-PPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYIT

Query:  GPPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLM
        GPPGDLYPIDQ+YNAA+RRLVSAAASAV+GLAVAGVLM
Subjt:  GPPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLM

TrEMBL top hitse value%identityAlignment
A0A0A0KPJ1 Uncharacterized protein2.0e-3971.83Show/hide
Query:  MLPFNSLLFLALLLLISPSS--SSAAVRRLDD--TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFM
        MLP   LLFL  LLLISPSS  +S  VRRLDD  TP DP VKC+PCEQNPPSPPPP VYPSPPPPSPPPPDVV YYSPPPP KK+ K+ +CPPPP+P+FM
Subjt:  MLPFNSLLFLALLLLISPSS--SSAAVRRLDD--TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFM

Query:  YITGPPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM
        YITGPPGDLYPIDQ YNAA RR    +A+ VVG+ +AG+L++
Subjt:  YITGPPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM

A0A1S3CT22 extensin-like4.8e-4173.94Show/hide
Query:  MLPFNSLLFLALLLLISPSS--SSAAVRRLDD--TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFM
        MLP   LLFL  LLLISPSS  +SA VRRLDD  TP DP VKC+PCEQNPPSPPPP VYPSPPPPSPPPPDVV YYSPPPP KK+ KN +CPPPP+P+FM
Subjt:  MLPFNSLLFLALLLLISPSS--SSAAVRRLDD--TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFM

Query:  YITGPPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM
        YITGPPGDLYPIDQ+YNAA RR   +AA+A VG+ +AG+L++
Subjt:  YITGPPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM

A0A6J1DDL2 acrosin2.0e-3970.27Show/hide
Query:  MLPFNSLLFLALLLLISPS---SSSAAVRRLDDTPA------DPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPP
        MLP  SLLFL LLLLISPS   ++SAA R LD+ PA      DPTVKC+PC+QNPPSPPPPP+YPSPPPPSPPPPDV+ YYS PPPPKK   ND+CPPPP
Subjt:  MLPFNSLLFLALLLLISPS---SSSAAVRRLDDTPA------DPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPP

Query:  -APNFMYITGPPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM
          P+F YITGPPGDLYPIDQ YNAA+R L SAAA+AVVGL + G+ ++
Subjt:  -APNFMYITGPPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM

A0A6J1GMY1 extensin4.5e-6399.28Show/hide
Query:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG
        MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG
Subjt:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG

Query:  PPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM
        PPGDLYPIDQSYNAASRRLVS AASAVVGLAVAGVLMM
Subjt:  PPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM

A0A6J1JNW0 leucine-rich repeat extensin-like protein 33.7e-5790.21Show/hide
Query:  MLPFNSLLFLALLLLISPSSSSAAVRRLDD-----TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNF
        MLPFNSLLFL LLLLISPSSSSAAVRRLDD     TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVV+YYS PPPPKKDHKN+DCPPPP+PNF
Subjt:  MLPFNSLLFLALLLLISPSSSSAAVRRLDD-----TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNF

Query:  MYITGPPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM
        MYITGPPGDLYPIDQ+YNAA+RRLVSAAASAV+GLAVAGVLM+
Subjt:  MYITGPPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLMM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G02405.1 proline-rich family protein4.8e-0944.44Show/hide
Query:  LFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQN----PPSPPPPPVYPSPPPPSPPPP-DVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITGPP
        + +A+++L SP   +A     +D+ A+  V C PC QN    PPSPPPP   PSPPPPSPPPP       SP PPP         PPPP PN+++ T PP
Subjt:  LFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQN----PPSPPPPPVYPSPPPPSPPPP-DVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITGPP

Query:  GDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLM
        GDLYPI+  Y AA    V+  + +V+ L V GV++
Subjt:  GDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVLM

AT1G23040.1 hydroxyproline-rich glycoprotein family protein1.1e-1349.28Show/hide
Query:  SLLFLALL---LLISPSSSSAA---VRRLDDTPADPTVKCSP-CEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYI
        +++ +ALL    LI+ SSSS A    R+LD+   DP +KCSP C QNPP P PPP  PSPPPP+ PPP  +    PPPPPKK   +  CPPPP  NF+YI
Subjt:  SLLFLALL---LLISPSSSSAA---VRRLDDTPADPTVKCSP-CEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYI

Query:  TGPPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVL
        TGPPG+LYP+D+ + AA+ +  S     + GL   G++
Subjt:  TGPPGDLYPIDQSYNAASRRLVSAAASAVVGLAVAGVL

AT1G70990.1 proline-rich family protein5.1e-1143.8Show/hide
Query:  SLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPS---PPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITGPP
        +++FL   ++I+ S SS   R+L++ P    +KC+PC QN P P PPP  PSPPPPS   PPPP       PP PPKK +    CPPPP+  ++Y+TGPP
Subjt:  SLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPS---PPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITGPP

Query:  GDLYPIDQSYNAA-SRRLVSAAASAVVGLAVAGVLMM
        G+LYPIDQ + AA ++       S ++   V   LM+
Subjt:  GDLYPIDQSYNAA-SRRLVSAAASAVVGLAVAGVLMM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCCTTTCAATTCTCTCCTCTTTCTCGCCCTCCTCCTTCTAATCTCCCCCTCCTCCTCCTCCGCCGCCGTTCGCCGCCTCGACGACACCCCCGCCGACCCCACCGT
CAAGTGCTCCCCATGTGAACAAAACCCCCCATCTCCTCCTCCTCCACCGGTCTACCCCTCCCCTCCGCCGCCCTCTCCTCCACCGCCGGACGTTGTCATCTACTACTCTC
CTCCTCCCCCCCCTAAGAAGGATCACAAGAACGATGACTGCCCACCGCCGCCGGCTCCCAACTTCATGTACATAACCGGCCCTCCCGGCGACCTCTACCCCATCGACCAA
AGTTATAACGCTGCCTCCCGGAGACTCGTCTCCGCCGCAGCCTCCGCCGTGGTTGGGTTGGCTGTTGCTGGGGTTCTGATGATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCCTTTCAATTCTCTCCTCTTTCTCGCCCTCCTCCTTCTAATCTCCCCCTCCTCCTCCTCCGCCGCCGTTCGCCGCCTCGACGACACCCCCGCCGACCCCACCGT
CAAGTGCTCCCCATGTGAACAAAACCCCCCATCTCCTCCTCCTCCACCGGTCTACCCCTCCCCTCCGCCGCCCTCTCCTCCACCGCCGGACGTTGTCATCTACTACTCTC
CTCCTCCCCCCCCTAAGAAGGATCACAAGAACGATGACTGCCCACCGCCGCCGGCTCCCAACTTCATGTACATAACCGGCCCTCCCGGCGACCTCTACCCCATCGACCAA
AGTTATAACGCTGCCTCCCGGAGACTCGTCTCCGCCGCAGCCTCCGCCGTGGTTGGGTTGGCTGTTGCTGGGGTTCTGATGATGTAA
Protein sequenceShow/hide protein sequence
MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITGPPGDLYPIDQ
SYNAASRRLVSAAASAVVGLAVAGVLMM