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Carg27278 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27278
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-H2 finger protein 2B
Genome locationCarg_Chr04:16223525..16223938
RNA-Seq ExpressionCarg27278
SyntenyCarg27278
Gene Ontology termsGO:0009789 - positive regulation of abscisic acid-activated signaling pathway (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0047484 - regulation of response to osmotic stress (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032532.1 E3 ubiquitin-protein ligase RHA2B, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-75100Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSTAPSPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKDCLD
        MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSTAPSPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKDCLD
Subjt:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSTAPSPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKDCLD

Query:  GWLHHLNFNCPLCRSPIHLHQRVPFTLHSPLPHHVLA
        GWLHHLNFNCPLCRSPIHLHQRVPFTLHSPLPHHVLA
Subjt:  GWLHHLNFNCPLCRSPIHLHQRVPFTLHSPLPHHVLA

KAG7563173.1 Zinc finger RING-type [Arabidopsis suecica]2.3e-2951.8Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSTAPSP-----DSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFH
        MGLQ QL+D SSDS+PL  L+LLA F+  +R   L  ++ +P      S++S L   L+LNRL S+R Y+D+AASDC+VCL  L  G  VR+L C H+FH
Subjt:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSTAPSP-----DSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFH

Query:  KDCLDGWLHHLNFNCPLCRSPIHLHQRVPFTLHSPLPHH
        K CL+GWL HLNFNCPLCRSP+             LPHH
Subjt:  KDCLDGWLHHLNFNCPLCRSPIHLHQRVPFTLHSPLPHH

XP_010424850.1 PREDICTED: E3 ubiquitin-protein ligase RHA2B-like [Camelina sativa]2.3e-2958.4Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRR-SFLSSTAP----SPDSDISPLHQHLHLNRLLSHRY-YADSAASDCVVCLCPLSAGNPVRRLPCNHIF
        MGLQ QL+D SSDS+PL  ++LLA F   +R    L S+AP    S  S+IS L   L+LNRL S+RY YAD+A+SDC+VCL  L  G  VR+L C H+F
Subjt:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRR-SFLSSTAP----SPDSDISPLHQHLHLNRLLSHRY-YADSAASDCVVCLCPLSAGNPVRRLPCNHIF

Query:  HKDCLDGWLHHLNFNCPLCRSPIHL
        HK CL+GWL HLNFNCPLCRSP+ L
Subjt:  HKDCLDGWLHHLNFNCPLCRSPIHL

XP_010513818.1 PREDICTED: E3 ubiquitin-protein ligase RHA2B-like [Camelina sativa]2.3e-2958.2Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSTAP---SPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKD
        MGLQ QL+D SSDS+PL  ++LLA F   +R   L  +AP   S  S+IS L   L+LNRL S+R YAD+A+SDC+VCL  L  G  VR+L C H+FHK 
Subjt:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSTAP---SPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKD

Query:  CLDGWLHHLNFNCPLCRSPIHL
        CL+GWL HLNFNCPLCRSP+ L
Subjt:  CLDGWLHHLNFNCPLCRSPIHL

XP_022006424.1 E3 ubiquitin-protein ligase RHA2B [Helianthus annuus]4.1e-3155.38Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLS----STAPSPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHK
        MGLQ+ L D SSDSLPL  L+ +A  +S LR  F +    S  PS D  +  L  HL+LN LLS+++  D   SDCVVCL  L+AG  VR+LPC+H+FHK
Subjt:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLS----STAPSPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHK

Query:  DCLDGWLHHLNFNCPLCRSPIHLHQRVPFT
        +C DGWLHHLNFNCPLCRSP+   +RV  T
Subjt:  DCLDGWLHHLNFNCPLCRSPIHLHQRVPFT

TrEMBL top hitse value%identityAlignment
A0A1P8B060 RING-H2 finger protein 2B3.2e-2957.94Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSTAP--SPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKD
        MGLQ QL+D SSDS+PL  L+LLA F   +R   L  S+AP     S++S L   L+LNRL S+R Y+D+AASDC+VCL  L  G  VR+L C H+FHK 
Subjt:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSTAP--SPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKD

Query:  CLDGWLHHLNFNCPLCRSPI--HLHQ
        CL+GWL HLNFNCPLCRSP+  H HQ
Subjt:  CLDGWLHHLNFNCPLCRSPI--HLHQ

A0A1P8B063 RING-H2 finger protein 2B3.2e-2957.94Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSTAP--SPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKD
        MGLQ QL+D SSDS+PL  L+LLA F   +R   L  S+AP     S++S L   L+LNRL S+R Y+D+AASDC+VCL  L  G  VR+L C H+FHK 
Subjt:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSTAP--SPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKD

Query:  CLDGWLHHLNFNCPLCRSPI--HLHQ
        CL+GWL HLNFNCPLCRSP+  H HQ
Subjt:  CLDGWLHHLNFNCPLCRSPI--HLHQ

A0A251SN01 Putative zinc finger, RING/FYVE/PHD-type2.0e-3155.38Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLS----STAPSPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHK
        MGLQ+ L D SSDSLPL  L+ +A  +S LR  F +    S  PS D  +  L  HL+LN LLS+++  D   SDCVVCL  L+AG  VR+LPC+H+FHK
Subjt:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLS----STAPSPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHK

Query:  DCLDGWLHHLNFNCPLCRSPIHLHQRVPFT
        +C DGWLHHLNFNCPLCRSP+   +RV  T
Subjt:  DCLDGWLHHLNFNCPLCRSPIHLHQRVPFT

A0A384KIF8 (thale cress) hypothetical protein3.2e-2957.94Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSTAP--SPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKD
        MGLQ QL+D SSDS+PL  L+LLA F   +R   L  S+AP     S++S L   L+LNRL S+R Y+D+AASDC+VCL  L  G  VR+L C H+FHK 
Subjt:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSTAP--SPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKD

Query:  CLDGWLHHLNFNCPLCRSPI--HLHQ
        CL+GWL HLNFNCPLCRSP+  H HQ
Subjt:  CLDGWLHHLNFNCPLCRSPI--HLHQ

A0A654EQW0 RING-type domain-containing protein3.2e-2957.94Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSTAP--SPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKD
        MGLQ QL+D SSDS+PL  L+LLA F   +R   L  S+AP     S++S L   L+LNRL S+R Y+D+AASDC+VCL  L  G  VR+L C H+FHK 
Subjt:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSTAP--SPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKD

Query:  CLDGWLHHLNFNCPLCRSPI--HLHQ
        CL+GWL HLNFNCPLCRSP+  H HQ
Subjt:  CLDGWLHHLNFNCPLCRSPI--HLHQ

SwissProt top hitse value%identityAlignment
Q08DI6 RING finger protein 111.0e-0839.13Show/hide
Query:  LHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI
        L QHL        R  ++    +CV+C+     G+P+R LPC HI+H DC+D WL   +F CP C  P+
Subjt:  LHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI

Q93Z92 E3 ubiquitin-protein ligase At4g116801.0e-0851.11Show/hide
Query:  SDCVVCLCPLSAGNPVRRLPCNHIFHKDCLDGWLHHLNFNCPLCR
        ++C +CLC    G  +R LPCNH FH  C+D WL H+N  CPLC+
Subjt:  SDCVVCLCPLSAGNPVRRLPCNHIFHKDCLDGWLHHLNFNCPLCR

Q9SI09 Probable E3 ubiquitin-protein ligase XERICO6.0e-0942Show/hide
Query:  AASDCVVCLCPLSAGNPVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI
        A ++C VCL      + + +L C H+FHK CL+ W+ + N  CPLCR+P+
Subjt:  AASDCVVCLCPLSAGNPVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI

Q9ZT50 E3 ubiquitin-protein ligase RHA2A2.1e-2550.38Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSTAPS----PDSDIS---------PLHQHLHLNRLLSHRY-YADSAASDCVVCLCPLSAGNPVR
        MGLQ QL+D SSDS+PL  LSLLA F++ LR   L  T+ S    P  D+S          L   L LNRL S+R        SDCVVCL  L  G  VR
Subjt:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSTAPS----PDSDIS---------PLHQHLHLNRLLSHRY-YADSAASDCVVCLCPLSAGNPVR

Query:  RLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI
        +L C H+FHK CL+GWLH  NF CPLCRS +
Subjt:  RLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI

Q9ZU51 E3 ubiquitin-protein ligase RHA2B8.7e-3257.94Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSTAP--SPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKD
        MGLQ QL+D SSDS+PL  L+LLA F   +R   L  S+AP     S++S L   L+LNRL S+R Y+D+AASDC+VCL  L  G  VR+L C H+FHK 
Subjt:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSTAP--SPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKD

Query:  CLDGWLHHLNFNCPLCRSPI--HLHQ
        CL+GWL HLNFNCPLCRSP+  H HQ
Subjt:  CLDGWLHHLNFNCPLCRSPI--HLHQ

Arabidopsis top hitse value%identityAlignment
AT1G15100.1 RING-H2 finger A2A1.5e-2650.38Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSTAPS----PDSDIS---------PLHQHLHLNRLLSHRY-YADSAASDCVVCLCPLSAGNPVR
        MGLQ QL+D SSDS+PL  LSLLA F++ LR   L  T+ S    P  D+S          L   L LNRL S+R        SDCVVCL  L  G  VR
Subjt:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSTAPS----PDSDIS---------PLHQHLHLNRLLSHRY-YADSAASDCVVCLCPLSAGNPVR

Query:  RLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI
        +L C H+FHK CL+GWLH  NF CPLCRS +
Subjt:  RLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI

AT2G01150.1 RING-H2 finger protein 2B6.2e-3357.94Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSTAP--SPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKD
        MGLQ QL+D SSDS+PL  L+LLA F   +R   L  S+AP     S++S L   L+LNRL S+R Y+D+AASDC+VCL  L  G  VR+L C H+FHK 
Subjt:  MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSTAP--SPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKD

Query:  CLDGWLHHLNFNCPLCRSPI--HLHQ
        CL+GWL HLNFNCPLCRSP+  H HQ
Subjt:  CLDGWLHHLNFNCPLCRSPI--HLHQ

AT2G04240.1 RING/U-box superfamily protein4.3e-1042Show/hide
Query:  AASDCVVCLCPLSAGNPVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI
        A ++C VCL      + + +L C H+FHK CL+ W+ + N  CPLCR+P+
Subjt:  AASDCVVCLCPLSAGNPVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI

AT2G04240.2 RING/U-box superfamily protein4.3e-1042Show/hide
Query:  AASDCVVCLCPLSAGNPVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI
        A ++C VCL      + + +L C H+FHK CL+ W+ + N  CPLCR+P+
Subjt:  AASDCVVCLCPLSAGNPVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI

AT4G11680.1 Zinc finger, C3HC4 type (RING finger) family protein7.3e-1051.11Show/hide
Query:  SDCVVCLCPLSAGNPVRRLPCNHIFHKDCLDGWLHHLNFNCPLCR
        ++C +CLC    G  +R LPCNH FH  C+D WL H+N  CPLC+
Subjt:  SDCVVCLCPLSAGNPVRRLPCNHIFHKDCLDGWLHHLNFNCPLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTACAGAGCCAACTCAACGACTTCTCCTCCGACTCACTCCCTCTCTTCTTCCTCTCTCTCCTCGCCAATTTCCTCTCCCTCCTCCGCCGTTCTTTCCTCTCCTC
CACCGCTCCGTCTCCCGATTCCGATATTTCCCCTCTCCACCAACATCTTCATCTCAATCGCCTTCTCTCCCACCGCTACTACGCCGATTCCGCCGCCTCCGACTGTGTCG
TCTGCCTCTGTCCCCTCTCCGCTGGTAACCCCGTCCGCCGTCTACCTTGCAACCACATCTTCCACAAGGACTGCCTCGATGGTTGGCTTCATCATCTCAACTTCAACTGC
CCTCTCTGCCGCTCCCCCATCCACTTACACCAGCGCGTACCTTTCACGCTCCACTCTCCTCTCCCCCACCACGTTCTCGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTACAGAGCCAACTCAACGACTTCTCCTCCGACTCACTCCCTCTCTTCTTCCTCTCTCTCCTCGCCAATTTCCTCTCCCTCCTCCGCCGTTCTTTCCTCTCCTC
CACCGCTCCGTCTCCCGATTCCGATATTTCCCCTCTCCACCAACATCTTCATCTCAATCGCCTTCTCTCCCACCGCTACTACGCCGATTCCGCCGCCTCCGACTGTGTCG
TCTGCCTCTGTCCCCTCTCCGCTGGTAACCCCGTCCGCCGTCTACCTTGCAACCACATCTTCCACAAGGACTGCCTCGATGGTTGGCTTCATCATCTCAACTTCAACTGC
CCTCTCTGCCGCTCCCCCATCCACTTACACCAGCGCGTACCTTTCACGCTCCACTCTCCTCTCCCCCACCACGTTCTCGCCTAA
Protein sequenceShow/hide protein sequence
MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSTAPSPDSDISPLHQHLHLNRLLSHRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKDCLDGWLHHLNFNC
PLCRSPIHLHQRVPFTLHSPLPHHVLA