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Carg27315 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27315
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionethylene-responsive transcription factor RAP2-1
Genome locationCarg_Chr12:3460983..3461596
RNA-Seq ExpressionCarg27315
SyntenyCarg27315
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020585.1 hypothetical protein SDJN02_17271, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-1798.11Show/hide
Query:  MSAARAYDMVVRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDEA
        MSAARAYDMVVRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPD ESSDEA
Subjt:  MSAARAYDMVVRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDEA

KAG7020590.1 hypothetical protein SDJN02_17276, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-58100Show/hide
Query:  MGHHSCTMNEVGDSMSAARAYDMVVRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDEAFDRRSLRKKMMIMIRMSSSGEPPCGVHKSEYNV
        MGHHSCTMNEVGDSMSAARAYDMVVRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDEAFDRRSLRKKMMIMIRMSSSGEPPCGVHKSEYNV
Subjt:  MGHHSCTMNEVGDSMSAARAYDMVVRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDEAFDRRSLRKKMMIMIRMSSSGEPPCGVHKSEYNV

Query:  AVAVAVAMVNGNPKLAVFIK
        AVAVAVAMVNGNPKLAVFIK
Subjt:  AVAVAVAMVNGNPKLAVFIK

XP_008444599.1 PREDICTED: ethylene-responsive transcription factor RAP2-1 [Cucumis melo]4.6e-1092.68Show/hide
Query:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE
        RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPDPESSDE
Subjt:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE

XP_023536908.1 ethylene-responsive transcription factor RAP2-1-like [Cucurbita pepo subsp. pepo]1.8e-1458.51Show/hide
Query:  MNEVGDSMSAARAYDMVV----------------------------------RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDEA
        MNE GDSMSA RAYD VV                                  RAIEVGARVDAAAHHA+QRQSKPISDKPDLNQF DPESSDEA
Subjt:  MNEVGDSMSAARAYDMVV----------------------------------RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDEA

XP_038884237.1 ethylene-responsive transcription factor RAP2-1-like [Benincasa hispida]4.6e-1092.68Show/hide
Query:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE
        RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPDPESSDE
Subjt:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE

TrEMBL top hitse value%identityAlignment
A0A0A0LR87 AP2/ERF domain-containing protein1.4e-0990.24Show/hide
Query:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE
        RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPDPESS E
Subjt:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE

A0A1S3BAR1 ethylene-responsive transcription factor RAP2-12.2e-1092.68Show/hide
Query:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE
        RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPDPESSDE
Subjt:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE

A0A5A7V5C8 Ethylene-responsive transcription factor RAP2-12.2e-1092.68Show/hide
Query:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE
        RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPDPESSDE
Subjt:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE

A0A6J1HCJ9 ethylene-responsive transcription factor RAP2-1-like1.2e-0885.37Show/hide
Query:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE
        RAIEVGARVDAAA+  S RQSKPIS+KPDLNQFP+PESSDE
Subjt:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE

A0A6J1KB24 ethylene-responsive transcription factor RAP2-1-like1.2e-0885.37Show/hide
Query:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE
        RAIEVGARVDAAA+  S RQSKPIS+KPDLNQFP+PESSDE
Subjt:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACATCACAGTTGTACTATGAATGAAGTGGGAGACTCCATGAGTGCTGCCAGAGCCTACGACATGGTGGTAAGAGCTATTGAGGTCGGTGCTAGAGTTGACGCTGC
TGCTCACCATGCTTCTCAACGCCAATCCAAACCCATTTCCGACAAGCCTGATTTGAACCAGTTTCCGGACCCGGAAAGCTCCGACGAAGCTTTTGATCGACGATCACTAA
GAAAGAAGATGATGATAATGATAAGGATGAGTTCTTCTGGGGAACCGCCGTGTGGAGTTCACAAATCAGAGTATAACGTGGCCGTCGCCGTCGCCGTCGCCATGGTGAAC
GGAAACCCCAAACTTGCTGTTTTCATAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGACATCACAGTTGTACTATGAATGAAGTGGGAGACTCCATGAGTGCTGCCAGAGCCTACGACATGGTGGTAAGAGCTATTGAGGTCGGTGCTAGAGTTGACGCTGC
TGCTCACCATGCTTCTCAACGCCAATCCAAACCCATTTCCGACAAGCCTGATTTGAACCAGTTTCCGGACCCGGAAAGCTCCGACGAAGCTTTTGATCGACGATCACTAA
GAAAGAAGATGATGATAATGATAAGGATGAGTTCTTCTGGGGAACCGCCGTGTGGAGTTCACAAATCAGAGTATAACGTGGCCGTCGCCGTCGCCGTCGCCATGGTGAAC
GGAAACCCCAAACTTGCTGTTTTCATAAAATGA
Protein sequenceShow/hide protein sequence
MGHHSCTMNEVGDSMSAARAYDMVVRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDEAFDRRSLRKKMMIMIRMSSSGEPPCGVHKSEYNVAVAVAVAMVN
GNPKLAVFIK