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Carg27324 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27324
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncalcium-binding protein CML39-like
Genome locationCarg_Chr09:967552..967821
RNA-Seq ExpressionCarg27324
SyntenyCarg27324
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064378.1 putative calcium-binding protein CML10 [Cucumis melo var. makuwa]1.0e-3080.49Show/hide
Query:  LNSKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV
        ++S+SAYS KEL++IF+QMDTNEDGGLGLFEIKNALK+LDAE P+HLAY ALC+ADRN DGKLGEEEID+FVKYM+S+GYVV
Subjt:  LNSKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV

KAG6608479.1 hypothetical protein SDJN03_01821, partial [Cucurbita argyrosperma subsp. sororia]2.5e-2978.75Show/hide
Query:  SKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV
        S+S YS KEL+EIF+QMDTNEDGGLGLFEIK ALKQLDAEFP+HLA+KALC +DRN DGKLG +EID+F+KY++SEGYVV
Subjt:  SKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV

KAG7024250.1 hypothetical protein SDJN02_13064, partial [Cucurbita argyrosperma subsp. argyrosperma]6.8e-43100Show/hide
Query:  MSFFRPKLNSKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV
        MSFFRPKLNSKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV
Subjt:  MSFFRPKLNSKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV

KAG7037807.1 hypothetical protein SDJN02_01438, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-2978.75Show/hide
Query:  SKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV
        S+S YS KEL+EIF+QMDTNEDGGLGLFEIK ALKQLDAEFP+HLA+KALC +DRN DGKLG +EID+F+KY++SEGYVV
Subjt:  SKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV

KGN55187.1 hypothetical protein Csa_012728 [Cucumis sativus]2.4e-3275.79Show/hide
Query:  SFFRPK-------LNSKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV
        S FRPK       ++S+SAYS KEL++IF+QMDTNEDGGLGLFEIKNALK+LDAE P+HLAY ALCHADRN DGKLGEEEID+FVKYM+S+GYVV
Subjt:  SFFRPK-------LNSKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV

TrEMBL top hitse value%identityAlignment
A0A0A0L3J7 Uncharacterized protein1.2e-3275.79Show/hide
Query:  SFFRPK-------LNSKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV
        S FRPK       ++S+SAYS KEL++IF+QMDTNEDGGLGLFEIKNALK+LDAE P+HLAY ALCHADRN DGKLGEEEID+FVKYM+S+GYVV
Subjt:  SFFRPK-------LNSKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV

A0A5C7H7G7 Uncharacterized protein7.0e-0944.29Show/hide
Query:  ELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGY
        ELK    + D N+DG L   E++ AL++LD+ FP   +++AL HAD N DG + E+E+D  VKY++  GY
Subjt:  ELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGY

A0A5D3D9N2 Putative calcium-binding protein CML104.9e-3180.49Show/hide
Query:  LNSKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV
        ++S+SAYS KEL++IF+QMDTNEDGGLGLFEIKNALK+LDAE P+HLAY ALC+ADRN DGKLGEEEID+FVKYM+S+GYVV
Subjt:  LNSKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV

A0A6A1UYX3 Putative calcium-binding protein CML107.0e-0943.42Show/hide
Query:  YSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV
        Y+ ++L+ +F + DTN DG L   E++NA + L +  P   A++AL HADRN DG++ E E+D  V Y L  GY V
Subjt:  YSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV

W9S022 Putative calcium-binding protein CML107.0e-0942.31Show/hide
Query:  SAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV
        + Y  ++LK +  + DT+ DG L   E+K A K+L A  P   A +ALCHAD+N DG + EEE+   V Y    GYV+
Subjt:  SAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTCTTCCGTCCAAAACTGAATTCGAAGAGCGCCTACTCAACGAAGGAACTGAAAGAGATCTTCCACCAGATGGATACGAATGAAGACGGCGGGTTGGGATTGTT
CGAGATCAAGAACGCATTGAAGCAACTCGACGCTGAATTTCCAATCCATCTCGCCTACAAGGCTCTCTGTCACGCCGATCGGAACATAGATGGAAAGCTTGGCGAGGAGG
AGATCGATGAATTTGTCAAGTACATGTTGAGCGAAGGCTATGTTGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTCTTCCGTCCAAAACTGAATTCGAAGAGCGCCTACTCAACGAAGGAACTGAAAGAGATCTTCCACCAGATGGATACGAATGAAGACGGCGGGTTGGGATTGTT
CGAGATCAAGAACGCATTGAAGCAACTCGACGCTGAATTTCCAATCCATCTCGCCTACAAGGCTCTCTGTCACGCCGATCGGAACATAGATGGAAAGCTTGGCGAGGAGG
AGATCGATGAATTTGTCAAGTACATGTTGAGCGAAGGCTATGTTGTATGA
Protein sequenceShow/hide protein sequence
MSFFRPKLNSKSAYSTKELKEIFHQMDTNEDGGLGLFEIKNALKQLDAEFPIHLAYKALCHADRNIDGKLGEEEIDEFVKYMLSEGYVV