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Carg27330 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27330
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCold regulated protein 27
Genome locationCarg_Chr09:992899..995355
RNA-Seq ExpressionCarg27330
SyntenyCarg27330
Gene Ontology termsGO:0009409 - response to cold (biological process)
GO:0042752 - regulation of circadian rhythm (biological process)
InterPro domainsIPR044678 - Cold-regulated protein 27/28


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591377.1 Cold-regulated protein 27, partial [Cucurbita argyrosperma subsp. sororia]1.5e-8171.31Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL----------------------------------------------------------
        MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL                                                          
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL----------------------------------------------------------

Query:  -----------FKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN
                   FKVLRRGSWKNINFETTESRSNLLNDFQALSRN WIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN
Subjt:  -----------FKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
        EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS

KAG7024256.1 hypothetical protein SDJN02_13070 [Cucurbita argyrosperma subsp. argyrosperma]2.0e-91100Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLFKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSG
        MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLFKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSG
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLFKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSG

Query:  GRNLFPLGAANDSEPLRACDSDFSLQYISSNEEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
        GRNLFPLGAANDSEPLRACDSDFSLQYISSNEEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
Subjt:  GRNLFPLGAANDSEPLRACDSDFSLQYISSNEEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS

XP_022935854.1 uncharacterized protein LOC111442637 isoform X1 [Cucurbita moschata]1.5e-7870.42Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL----------------------------------------------------------
        MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL                                                          
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL----------------------------------------------------------

Query:  -----------FKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN
                   FKVLRRGSWKNINFETTESRSNLLNDFQALSRN WIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSD SLQYISSN
Subjt:  -----------FKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ
        EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ

XP_022935855.1 uncharacterized protein LOC111442637 isoform X2 [Cucurbita moschata]7.3e-8170.9Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL----------------------------------------------------------
        MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL                                                          
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL----------------------------------------------------------

Query:  -----------FKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN
                   FKVLRRGSWKNINFETTESRSNLLNDFQALSRN WIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSD SLQYISSN
Subjt:  -----------FKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
        EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS

XP_022976398.1 uncharacterized protein LOC111476815 isoform X2 [Cucurbita maxima]6.0e-7568.03Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL----------------------------------------------------------
        MELLPPNLENH AVETRTD LISEL KD+STEFALPVESSSL                                                          
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL----------------------------------------------------------

Query:  -----------FKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN
                   FKVLRRGSWKNINFETTESRSNLLNDFQALSRN WIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAAN+SEPLRAC SD SLQYISSN
Subjt:  -----------FKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
        EEVSDQNFVDEDREVGNGSSDC NAKRVNTPETNALINEQPEDS
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS

TrEMBL top hitse value%identityAlignment
A0A0A0L0A2 Polyketide_cyc domain-containing protein1.7e-5152.92Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSS-----------------------------------------------------------
        MELLPPNL++ N  ETR DSL+SE  KD+STEF+ P+ESSS                                                           
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSS-----------------------------------------------------------

Query:  ----------LFKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN
                   FKVLRRGSWKNINFE TESRSN LN++QALS N WIHHFRA RKNKNV CKSQAIGS GRN   LGAAN+S P+RA DSD S QYIS+N
Subjt:  ----------LFKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ
        +EVSDQNFVDE  EV  GS DC NAKR N  ETNALIN+Q
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ

A0A6J1F6L8 uncharacterized protein LOC111442637 isoform X17.3e-7970.42Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL----------------------------------------------------------
        MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL                                                          
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL----------------------------------------------------------

Query:  -----------FKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN
                   FKVLRRGSWKNINFETTESRSNLLNDFQALSRN WIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSD SLQYISSN
Subjt:  -----------FKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ
        EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ

A0A6J1FBV0 uncharacterized protein LOC111442637 isoform X23.5e-8170.9Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL----------------------------------------------------------
        MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL                                                          
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL----------------------------------------------------------

Query:  -----------FKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN
                   FKVLRRGSWKNINFETTESRSNLLNDFQALSRN WIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSD SLQYISSN
Subjt:  -----------FKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
        EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS

A0A6J1IFL9 uncharacterized protein LOC111476815 isoform X16.0e-7367.5Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL----------------------------------------------------------
        MELLPPNLENH AVETRTD LISEL KD+STEFALPVESSSL                                                          
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL----------------------------------------------------------

Query:  -----------FKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN
                   FKVLRRGSWKNINFETTESRSNLLNDFQALSRN WIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAAN+SEPLRAC SD SLQYISSN
Subjt:  -----------FKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ
        EEVSDQNFVDEDREVGNGSSDC NAKRVNTPETNALINEQ
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQ

A0A6J1IM11 uncharacterized protein LOC111476815 isoform X22.9e-7568.03Show/hide
Query:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL----------------------------------------------------------
        MELLPPNLENH AVETRTD LISEL KD+STEFALPVESSSL                                                          
Subjt:  MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSL----------------------------------------------------------

Query:  -----------FKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN
                   FKVLRRGSWKNINFETTESRSNLLNDFQALSRN WIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAAN+SEPLRAC SD SLQYISSN
Subjt:  -----------FKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAANDSEPLRACDSDFSLQYISSN

Query:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS
        EEVSDQNFVDEDREVGNGSSDC NAKRVNTPETNALINEQPEDS
Subjt:  EEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G42900.1 cold regulated gene 274.5e-0432.06Show/hide
Query:  ESTEFALPVE-SSSLFKVLRRGSWKNINFETTESRSNLLN--DFQALSRNAWIHHFRADRKNKNVAC---KSQAIGS--GGRNLFPLGAANDSEPLRACD
        EST F    + S   FKVL  G W+ IN +  E R N  +  +     R+ WI H++   K +       ++Q + S  G + +   G+A+  + L +  
Subjt:  ESTEFALPVE-SSSLFKVLRRGSWKNINFETTESRSNLLN--DFQALSRNAWIHHFRADRKNKNVAC---KSQAIGS--GGRNLFPLGAANDSEPLRACD

Query:  SDFSLQYISSNEEVSDQNFVDEDREVGNGSS
         D   Q      EVSDQNFV+E  +  NGSS
Subjt:  SDFSLQYISSNEEVSDQNFVDEDREVGNGSS

AT5G42900.2 cold regulated gene 274.5e-0432.06Show/hide
Query:  ESTEFALPVE-SSSLFKVLRRGSWKNINFETTESRSNLLN--DFQALSRNAWIHHFRADRKNKNVAC---KSQAIGS--GGRNLFPLGAANDSEPLRACD
        EST F    + S   FKVL  G W+ IN +  E R N  +  +     R+ WI H++   K +       ++Q + S  G + +   G+A+  + L +  
Subjt:  ESTEFALPVE-SSSLFKVLRRGSWKNINFETTESRSNLLN--DFQALSRNAWIHHFRADRKNKNVAC---KSQAIGS--GGRNLFPLGAANDSEPLRACD

Query:  SDFSLQYISSNEEVSDQNFVDEDREVGNGSS
         D   Q      EVSDQNFV+E  +  NGSS
Subjt:  SDFSLQYISSNEEVSDQNFVDEDREVGNGSS

AT5G42900.3 cold regulated gene 273.1e-0533.59Show/hide
Query:  ESTEFALPVE-SSSLFKVLRRGSWKNINFETTESRSNLLN--DFQALSRNAWIHHFRADRKNKNVAC---KSQAIGS--GGRNLFPLGAANDSEPLRACD
        EST F    + S   FKVL  G W+ IN +  E R N  +  +     R+ WI H++   K +       ++Q + S  G + +   G+A+  + L +  
Subjt:  ESTEFALPVE-SSSLFKVLRRGSWKNINFETTESRSNLLN--DFQALSRNAWIHHFRADRKNKNVAC---KSQAIGS--GGRNLFPLGAANDSEPLRACD

Query:  SDFSLQYISSNEEVSDQNFVDEDREVGNGSS
         D     IS  EEVSDQNFV+E  +  NGSS
Subjt:  SDFSLQYISSNEEVSDQNFVDEDREVGNGSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTGTTGCCTCCAAATTTGGAGAATCACAACGCCGTAGAAACTCGGACCGACTCACTCATCTCTGAATTGGCCAAGGACGAGTCGACCGAGTTTGCCCTCCCGGT
GGAATCTTCTAGCCTGTTTAAAGTTCTTCGACGAGGCAGCTGGAAGAACATTAATTTTGAAACAACTGAATCTCGGTCGAATTTATTGAATGATTTCCAAGCTCTCTCAC
GTAATGCTTGGATACATCACTTTCGAGCTGATCGTAAAAACAAAAATGTTGCATGCAAAAGTCAAGCTATCGGTTCAGGAGGAAGGAATTTGTTTCCTTTAGGAGCAGCA
AATGATTCAGAACCTTTGCGTGCTTGTGATTCTGATTTCTCCCTACAATATATCAGCAGCAATGAAGAAGTGTCAGATCAGAATTTTGTTGATGAAGATAGAGAAGTTGG
AAACGGGAGCAGTGATTGCAGCAATGCCAAAAGGGTCAACACTCCAGAGACCAATGCCTTGATCAATGAACAGCCAGAAGATAGCTAG
mRNA sequenceShow/hide mRNA sequence
TCTGTCGCCATTACAAATCTGGAGAGATTATCATTCATCCTCTTGAGCATTCATGGAGTTGTTGCCTCCAAATTTGGAGAATCACAACGCCGTAGAAACTCGGACCGACT
CACTCATCTCTGAATTGGCCAAGGACGAGTCGACCGAGTTTGCCCTCCCGGTGGAATCTTCTAGCCTGTTTAAAGTTCTTCGACGAGGCAGCTGGAAGAACATTAATTTT
GAAACAACTGAATCTCGGTCGAATTTATTGAATGATTTCCAAGCTCTCTCACGTAATGCTTGGATACATCACTTTCGAGCTGATCGTAAAAACAAAAATGTTGCATGCAA
AAGTCAAGCTATCGGTTCAGGAGGAAGGAATTTGTTTCCTTTAGGAGCAGCAAATGATTCAGAACCTTTGCGTGCTTGTGATTCTGATTTCTCCCTACAATATATCAGCA
GCAATGAAGAAGTGTCAGATCAGAATTTTGTTGATGAAGATAGAGAAGTTGGAAACGGGAGCAGTGATTGCAGCAATGCCAAAAGGGTCAACACTCCAGAGACCAATGCC
TTGATCAATGAACAGCCAGAAGATAGCTAGATCCCAGATTGTCGCCAATACGAGGCAGACGACTTATCGACTACTCTTTTAACTCCGGGAAAGGCTATAGATGATCTGAG
ATTGTTGGTGAAGTCTATAATGCTCATTTTGAGGTTATTGGTTTCTGTTGATTA
Protein sequenceShow/hide protein sequence
MELLPPNLENHNAVETRTDSLISELAKDESTEFALPVESSSLFKVLRRGSWKNINFETTESRSNLLNDFQALSRNAWIHHFRADRKNKNVACKSQAIGSGGRNLFPLGAA
NDSEPLRACDSDFSLQYISSNEEVSDQNFVDEDREVGNGSSDCSNAKRVNTPETNALINEQPEDS