CuGenDBv2

Gene ID	Carg27355
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Small nuclear ribonucleoprotein Sm D1
Genome location	Carg_Chr02:9981167..9984347
RNA-Seq Expression	Carg27355
Synteny	Carg27355
Gene Ontology terms	GO:0006396 - RNA processing (biological process) GO:0110165 - cellular anatomical structure (cellular component)
InterPro domains	IPR027141 - Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAD6120146.1 hypothetical protein E3N88_11417 [Mikania micrantha]

1.7e-23

37.99

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL
        +  RFLMKLNNETVSIELKNGTVVH                       G I     GVDISMNTHLK VKLTLKGKNPV              Y     L
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL

Query:  DLETLLVEETPGSSPRNLLQGKPLG-RGRVDE--EPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLF
        +LETLLVEETP   P+    G+    +  V +  +P  WS       L  Q     V+ ED                                SSN   F
Subjt:  DLETLLVEETPGSSPRNLLQGKPLG-RGRVDE--EPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLF

Query:  INSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDD
        + +  + TP             K A +V GALA GW AIE+AFKP LD+ R++M+ +DP RD DD AD  +D + S D+
Subjt:  INSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDD

KAG6571478.1 Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia]

3.8e-28

41.86

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVYHGSFKLDLETLLVEETPGSS
        +  RFLMKLNNETVSIELKNGTVVH                       G I     GVDISMNTHLKAVKLTLKGKNPV             +    GSS
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVYHGSFKLDLETLLVEETPGSS

Query:  PRNLLQGKPLGRGRVDEEPWAWS-------WSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVF---FYLEIKVESSLEFRALSSSNCVLFINSDKQF
         RN LQG       VDE+    +       +   +   +   + + +VA+D+  + +  + L   F    +         E R  S S+ +L        
Subjt:  PRNLLQGKPLGRGRVDEEPWAWS-------WSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVF---FYLEIKVESSLEFRALSSSNCVLFINSDKQF

Query:  TPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDD
        T T    MGKK S +KQA  + GALALGWLAIEMAFKP LD+ RSAMDN+DP RD DD
Subjt:  TPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDD

KAG6606428.1 Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia]

2.1e-50

50.84

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVYHGSFKLDLETLLVEETPGSS
        +  RFLMKLNNETVSIELKNGTVVH                       G I     GVDISMNTHLKAVKLTLKGKNPV             +   PGSS
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVYHGSFKLDLETLLVEETPGSS

Query:  PRNLLQGKPLGRGRVDEEPWAWSWSWTLDLLQFQILISV--VVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVL----------------
        PRNLLQG   G   VDE+          + +   +++    V   +  L S +   LG V  + ++K+  S    +LS   C+L                
Subjt:  PRNLLQGKPLGRGRVDEEPWAWSWSWTLDLLQFQILISV--VVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVL----------------

Query:  ------------FINSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV
                     IN+D+    T QEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV
Subjt:  ------------FINSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV

KAG7036368.1 Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.4e-149

100

Show/hide

Query:  KTWFDEFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVYHGSFKLDLETLLVEE
        KTWFDEFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVYHGSFKLDLETLLVEE
Subjt:  KTWFDEFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVYHGSFKLDLETLLVEE

Query:  TPGSSPRNLLQGKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLFINSDKQFTPTQQ
        TPGSSPRNLLQGKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLFINSDKQFTPTQQ
Subjt:  TPGSSPRNLLQGKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLFINSDKQFTPTQQ

Query:  EKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV
        EKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV
Subjt:  EKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV

VFR02113.1 unnamed protein product [Cuscuta campestris]

7.2e-27

37.01

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL
        +  RFLMKLNNETVSIELKNGTVV                       +G I     GVD+SMNTHLK VKLT KGKNPV              Y     +
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL

Query:  DLETLLVEETPGSSPRNLLQGKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLFINS
        +LETLLVE+TP   P+    GK LGRGR                                     G+  G     +   +  +  F  L           
Subjt:  DLETLLVEETPGSSPRNLLQGKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLFINS

Query:  DKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV
                +EKMG+K S  K AA+VFGALA GWLAIE+AFKP LD+ R+A+  +DP  D DD  +N     PSD D  +++
Subjt:  DKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV

TrEMBL top hits

e value

%identity

Alignment

A0A1R3KD71 Small nuclear ribonucleoprotein Sm D1

5.2e-23

37.86

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL
        +  RFLMKLNNETVSIELKNGTVV                       +G I     GVDISMNTHLK VKLTLKGKNPV              Y     +
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL

Query:  DLETLLVEETPGSSPRNLLQGKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLFINS
        +LETLLVEETP   P+     KP                                AE+                          E RA            
Subjt:  DLETLLVEETPGSSPRNLLQGKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLFINS

Query:  DKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQ-RPSDDDQST
               ++ KMGK  +  KQAA+VFGALA GWLAIEMAFKP LD+ R +MD +DP RD DD   ++ D  R +DDD S+
Subjt:  DKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQ-RPSDDDQST

A0A484NMA3 Small nuclear ribonucleoprotein Sm D1

3.5e-27

37.01

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL
        +  RFLMKLNNETVSIELKNGTVV                       +G I     GVD+SMNTHLK VKLT KGKNPV              Y     +
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL

Query:  DLETLLVEETPGSSPRNLLQGKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLFINS
        +LETLLVE+TP   P+    GK LGRGR                                     G+  G     +   +  +  F  L           
Subjt:  DLETLLVEETPGSSPRNLLQGKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLFINS

Query:  DKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV
                +EKMG+K S  K AA+VFGALA GWLAIE+AFKP LD+ R+A+  +DP  D DD  +N     PSD D  +++
Subjt:  DKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV

A0A5C7I3G1 Small nuclear ribonucleoprotein Sm D1

1.2e-22

37.41

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL
        +  RFLMKLNNETVSIELKNGT+VH                       G I     GVDISMNTHLKAVKLTLKGKNPV              Y     L
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL

Query:  DLETLLVEETPGSSPRNLLQGKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLFINS
        +LETLLVEETP   P+     KP                       + + I VV           G+ +GG                             
Subjt:  DLETLLVEETPGSSPRNLLQGKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLFINS

Query:  DKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQS
                     +     K+A  VFGALALGWLAIE+A KP LD+ R+AMD +DPARD DD+ D  +++ PSD D S
Subjt:  DKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQS

A0A5J5A0A2 Small nuclear ribonucleoprotein Sm D1

1.4e-20

47.92

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL
        +  RFLMKLNNETVSIELKNGTVVH                       G I     GVDISMNTHLK VKLTLKGKNPV              Y     +
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL

Query:  DLETLLVEETPGSSPRNLLQGKPLGRGRVDEEPWAWSWSWTLDL
        +LETLLVEETP   P+    G+PLG        WAW+W+W LD+
Subjt:  DLETLLVEETPGSSPRNLLQGKPLGRGRVDEEPWAWSWSWTLDL

A0A5N6PG97 Small nuclear ribonucleoprotein Sm D1

8.0e-24

37.99

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL
        +  RFLMKLNNETVSIELKNGTVVH                       G I     GVDISMNTHLK VKLTLKGKNPV              Y     L
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL

Query:  DLETLLVEETPGSSPRNLLQGKPLG-RGRVDE--EPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLF
        +LETLLVEETP   P+    G+    +  V +  +P  WS       L  Q     V+ ED                                SSN   F
Subjt:  DLETLLVEETPGSSPRNLLQGKPLG-RGRVDE--EPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLF

Query:  INSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDD
        + +  + TP             K A +V GALA GW AIE+AFKP LD+ R++M+ +DP RD DD AD  +D + S D+
Subjt:  INSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDD

SwissProt top hits

e value

%identity

Alignment

O42661 Small nuclear ribonucleoprotein Sm D1

4.0e-12

38.46

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL
        +  RFLMKL NETVSIELKNGT+VH                       G I      VD+ MNTHLKAVK+T+KG+ PV              Y     L
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL

Query:  DLETLLVEET--PGSSPRNLLQGKPLGRGR
         L+TLL++++  P    + +++G+  GRGR
Subjt:  DLETLLVEET--PGSSPRNLLQGKPLGRGR

Q3ZC10 Small nuclear ribonucleoprotein Sm D1

2.0e-11

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVYHGSF--------------KL
        +  RFLMKL++ETV+IELKNGT VH                       G I     GVD+SMNTHLKAVK+TLK + PV   +                L
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVYHGSF--------------KL

Query:  DLETLLVEETP--GSSPRNLLQGKPLGRGR
         L+TLLV+  P   S  R  + G+  GRGR
Subjt:  DLETLLVEETP--GSSPRNLLQGKPLGRGR

Q9SSF1 Small nuclear ribonucleoprotein SmD1a

9.8e-19

48.44

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVY--HGSFK------------L
        +  RFLMKLNNETVSIELKNGTVVH                       G I     GVD+SMNTHLK VK++LKGKNPV   H S +            L
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVY--HGSFK------------L

Query:  DLETLLVEETPGSSPRNLLQGKPLGRGR
        +LETLLVE+TP   P+  + GK +GRGR
Subjt:  DLETLLVEETPGSSPRNLLQGKPLGRGR

Q9SY09 Small nuclear ribonucleoprotein SmD1b

9.8e-19

49.61

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL
        +  RFLMKLNNETVSIELKNGT+VH                       G I     GVD+SMNTHLKAVKLTLKGKNPV              Y     L
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL

Query:  DLETLLVEETPGSSPRNLLQGK-PLGRGR
        +LETLLVE+TP   P+    GK P GRGR
Subjt:  DLETLLVEETPGSSPRNLLQGK-PLGRGR

Q9VU02 Probable small nuclear ribonucleoprotein Sm D1

1.5e-11

35.94

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVYHGSF--------------KL
        +  RFLMKL++ETV+IELKNGT +H                       G I     GVD++MNTHLK+V++T+K ++PV+  +                L
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVYHGSF--------------KL

Query:  DLETLLVEETPGSSPRNLLQGKPLGRGR
         LETLL+++TP S  +    G+   RGR
Subjt:  DLETLLVEETPGSSPRNLLQGKPLGRGR

Arabidopsis top hits

e value

%identity

Alignment

AT3G07590.1 Small nuclear ribonucleoprotein family protein

7.0e-20

48.44

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVY--HGSFK------------L
        +  RFLMKLNNETVSIELKNGTVVH                       G I     GVD+SMNTHLK VK++LKGKNPV   H S +            L
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVY--HGSFK------------L

Query:  DLETLLVEETPGSSPRNLLQGKPLGRGR
        +LETLLVE+TP   P+  + GK +GRGR
Subjt:  DLETLLVEETPGSSPRNLLQGKPLGRGR

AT3G07590.2 Small nuclear ribonucleoprotein family protein

7.0e-20

48.44

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVY--HGSFK------------L
        +  RFLMKLNNETVSIELKNGTVVH                       G I     GVD+SMNTHLK VK++LKGKNPV   H S +            L
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVY--HGSFK------------L

Query:  DLETLLVEETPGSSPRNLLQGKPLGRGR
        +LETLLVE+TP   P+  + GK +GRGR
Subjt:  DLETLLVEETPGSSPRNLLQGKPLGRGR

AT3G52420.1 outer envelope membrane protein 7

3.8e-10

60.42

Show/hide

Query:  KQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDD
        K S  KQA +V  A+ALGWLAIE+AFKP LD+ RS++D +DP +D DD
Subjt:  KQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDD

AT4G02840.1 Small nuclear ribonucleoprotein family protein

7.0e-20

49.61

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL
        +  RFLMKLNNETVSIELKNGT+VH                       G I     GVD+SMNTHLKAVKLTLKGKNPV              Y     L
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL

Query:  DLETLLVEETPGSSPRNLLQGK-PLGRGR
        +LETLLVE+TP   P+    GK P GRGR
Subjt:  DLETLLVEETPGSSPRNLLQGK-PLGRGR

AT4G02840.2 Small nuclear ribonucleoprotein family protein

9.7e-22

50.39

Show/hide

Query:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL
        +  RFLMKLNNETVSIELKNGT+VH            T  ++R        F  + GVD+SMNTHLKAVKLTLKGKNPV              Y     L
Subjt:  EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPV--------------YHGSFKL

Query:  DLETLLVEETPGSSPRNLLQGK-PLGRGR
        +LETLLVE+TP   P+    GK P GRGR
Subjt:  DLETLLVEETPGSSPRNLLQGK-PLGRGR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

AAAACTTGGTTTGATGAATTCACTAGGTTTTTGATGAAGCTCAACAATGAGACAGTTTCAATCGAGCTGAAAAATGGAACCGTTGTCCATGCACCATCACAGAAGCTCTT
ACTCTTTTTACTTGAAACCAAGCATTGGTCAAGGTTAGAAGTCATTGACGGGCTGATTTTCTTGTATCACTTAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTG
TAAAGCTTACTCTAAAGGGGAAAAATCCAGTTTACCATGGATCATTTAAGCTTGATCTTGAGACTTTACTTGTTGAAGAGACACCAGGGTCAAGCCCAAGAAACCTACTG
CAGGGAAAGCCTTTGGGGCGTGGACGAGTGGACGAGGAGCCGTGGGCGTGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTTCAAATTTTGATCTCCGTAGTGGTTGC
TGAAGACACTATTTTGGCAAGTAATGATGGTAAGACTCTTGGTGGCGTTTTCTTCTACCTTGAAATAAAAGTCGAGAGTTCTCTAGAGTTTAGAGCTCTTTCTTCCTCCA
ACTGCGTTCTTTTCATTAACTCGGACAAGCAATTTACCCCGACACAGCAAGAAAAGATGGGAAAGAAACAGTCTGATACCAAGCAAGCAGCTATCGTCTTTGGAGCCTTA
GCGCTGGGTTGGCTCGCCATTGAGATGGCTTTCAAGCCCATCCTCGATAGGGTCCGCTCCGCCATGGACAACGCTGATCCGGCTCGGGATACCGACGACCTTGCCGATAA
CCAATCTGATCAGAGGCCATCTGATGACGATCAAAGTACCACCGTTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

KTWFDEFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVYHGSFKLDLETLLVEETPGSSPRNLL
QGKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLFINSDKQFTPTQQEKMGKKQSDTKQAAIVFGAL
ALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV

Carg27355 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome