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Carg27380 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27380
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionmalignant T-cell-amplified sequence 1 homolog
Genome locationCarg_Chr10:9286323..9288374
RNA-Seq ExpressionCarg27380
SyntenyCarg27380
Gene Ontology termsGO:0001731 - formation of translation preinitiation complex (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR016437 - MCT-1/Tma20
IPR041366 - Pre-PUA domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2256652.1 hypothetical protein Bca52824_075946 [Brassica carinata]1.0e-1770.42Show/hide
Query:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI-----SKPSQSGCCEQCATLF
        MFKKFS E+VS+QNQVK SVQRRIRQSI +EYPGLE V+DDLLPKK+PLI      KPS   CC+QCA  F
Subjt:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI-----SKPSQSGCCEQCATLF
KAG7023988.1 TMA20 [Cucurbita argyrosperma subsp. argyrosperma]3.0e-30100Show/hide
Query:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQSGCCEQCATLFQYP
        MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQSGCCEQCATLFQYP
Subjt:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQSGCCEQCATLFQYP
XP_022961538.1 malignant T-cell-amplified sequence 1 homolog [Cucurbita moschata]1.7e-1791.07Show/hide
Query:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
        MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Subjt:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
XP_022968801.1 malignant T-cell-amplified sequence 1 homolog [Cucurbita maxima]1.7e-1791.07Show/hide
Query:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
        MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Subjt:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
XP_023515958.1 malignant T-cell-amplified sequence 1 homolog [Cucurbita pepo subsp. pepo]1.7e-1791.07Show/hide
Query:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
        MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Subjt:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
TrEMBL top hitse value%identityAlignment
A0A0A0LYF6 PUA domain-containing protein1.8e-1789.29Show/hide
Query:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
        MFKKFSTEDVSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Subjt:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
A0A6J1C273 malignant T-cell-amplified sequence 1 homolog1.8e-1789.29Show/hide
Query:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
        MFKKFSTEDVSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Subjt:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
A0A6J1HC33 malignant T-cell-amplified sequence 1 homolog8.3e-1891.07Show/hide
Query:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
        MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Subjt:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
A0A6J1HVW2 malignant T-cell-amplified sequence 1 homolog8.3e-1891.07Show/hide
Query:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
        MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Subjt:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
B3TLK5 Pseudouridine synthase and archaeosine transglycosylase-like protein1.8e-1789.29Show/hide
Query:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
        MFKKFSTEDVSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Subjt:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
SwissProt top hitse value%identityAlignment
P87313 Translation machinery-associated protein 202.7e-0544Show/hide
Query:  MFKKF-STEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPL
        MFK+F S ED+     +K+S+QR I+  + + YP L+ V+D+L+PKK+ L
Subjt:  MFKKF-STEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPL
P89886 Translation machinery-associated protein 202.2e-0744.9Show/hide
Query:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPL
        MFKKF+ EDV ++++VK+S+QR ++  + ++YP +E V+D+L+PKK+ +
Subjt:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPL
Q2KIE4 Malignant T-cell-amplified sequence 12.9e-0446Show/hide
Query:  MFKKF-STEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPL
        MFKKF   E+VS   Q+K SV + I+  + E++PG+EP L+ ++PKK P+
Subjt:  MFKKF-STEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPL
Q75AA8 Translation machinery-associated protein 204.4e-0853.06Show/hide
Query:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPL
        MFKKFS ED+  + +VK SVQR ++  + E++P LE V+D+LLPKK  L
Subjt:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPL
Q86KL4 Malignant T-cell-amplified sequence 1 homolog2.0e-0542.11Show/hide
Query:  MFKKFSTEDVS-AQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
        MFKK S +  S   NQ+K+S+QR I+ SI  +YP L+ + +D+ PKK P++    Q+
Subjt:  MFKKFSTEDVS-AQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS
Arabidopsis top hitse value%identityAlignment
AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein4.5e-1678Show/hide
Query:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI
        MFKKF  E++S+QNQVKASVQRRIRQSI +EYPGLE V++DLLPKK PLI
Subjt:  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAAAAAGTTTTCTACTGAAGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAATATCCTGGACTGGAGCC
AGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGA
mRNA sequenceShow/hide mRNA sequence
TCTTCTCTCGACGTCTGCGTACTCTCTTCCCATTTCCACACCGATCCTCTGGTGGGATCCGAGCAATTGTCTCCTATCGTTCTGGAGTCCTCTTCAAATTCAATCTAACA
ATCTGTATTTTCTGAAATTTTTATTAGGATTCTCTTCATATAACTCTGCGGCATCATGTTCAAAAAGTTTTCTACTGAAGACGTGTCTGCCCAGAATCAAGTCAAGGCAT
CGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAATATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTTCAAAACCATCTCAA
TCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATGTAATGTTCTTCTGATAACCCTTTTAA
CTTCTGTTGCAATATGTATCATTTTTGTGGATCTTTTTTCTTAAACATGTAAGCCCATTGCATTGTTTTGTGAAGATGTTTTAAATGAATATTTCCGCACAAGATGTTAT
GTCATGCATGTAGTAGTGACATTAGATTAGTAGAAAACTAGGGTCGTTACAATATTCTTCTGACAACCCTTGTAACTTCTATTGCAATACATATCGTAGGTGTTGAGGAT
TGTTGGGAGGGAGTCCCACATTGACTAATTAAGAGGACAATCCTTGGTTTGTAAGTAAGGAATATATCTCCATTGGTGGGGGAGGCCTTTTGGGGAAACCAAAAGCAAAA
CCACGAGAGTTAT
Protein sequenceShow/hide protein sequence
MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQSGCCEQCATLFQYP