CuGenDBv2

Gene ID	Carg27418
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	chloroplast stem-loop binding protein of 41 kDa b, chloroplastic
Genome location	Carg_Chr10:10199282..10206448
RNA-Seq Expression	Carg27418
Synteny	Carg27418
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0005829 - cytosol (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR036291 - NAD(P)-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7024035.1 Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

9.2e-155

100

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Query:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQGDRKDFDFVKSSLSAAG
        MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQGDRKDFDFVKSSLSAAG
Subjt:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQGDRKDFDFVKSSLSAAG

Query:  FDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNP
        FDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNP
Subjt:  FDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNP

Query:  KEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
        KEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Subjt:  KEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA

XP_008442117.1 PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucumis melo]

9.5e-136

69.97

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Query:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------
        MGIMANPMAAHHQK  SFSVLPSSLSDF+GARLHAQVQYKRKVMQPKG LHVTASAKKNIL+MGGTRFIGIFLSRLLVKEGHQ                 
Subjt:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------

Query:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------
                         GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE                   
Subjt:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------

Query:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
                                                               DLATAFVQVLGN+KASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Subjt:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE

Query:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
        PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGL DSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Subjt:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA

XP_022961476.1 chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucurbita moschata]

1.1e-139

71.8

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Query:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------
        MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ                 
Subjt:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------

Query:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------
                         GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE                   
Subjt:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------

Query:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
                                                               DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Subjt:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE

Query:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
        PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Subjt:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA

XP_022968745.1 chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucurbita maxima]

3.0e-137

71.02

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Query:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------
        MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTA AKKNILVMGGTRFIGIFLSRLLVKEGHQ                 
Subjt:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------

Query:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------
                         GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE                   
Subjt:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------

Query:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
                                                               DLATAFVQVLGN KASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Subjt:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE

Query:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
        PEIVHYNPKEFDFGKKK FPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Subjt:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA

XP_023515393.1 chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucurbita pepo subsp. pepo]

4.1e-139

71.54

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Query:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------
        MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASA KNILVMGGTRFIGIFLSRLLVKEGHQ                 
Subjt:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------

Query:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------
                         GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE                   
Subjt:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------

Query:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
                                                               DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Subjt:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE

Query:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
        PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Subjt:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZ66 Epimerase domain-containing protein

7.4e-134

68.67

Show/hide

Query:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------
        MGIMANPMAAHHQK  SFSVLPSSLSDF+GARLHAQVQYKRKVMQPKG LHVTASAKKNIL+MGGTRFIGIFLSRLLVKEGHQ                 
Subjt:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------

Query:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------
                         GDRKDFDFVKSSLSAAGFDVVYDINGREA EVEPI+DALPKLEQFIYCSSAGVYLKSDLLPHFE                   
Subjt:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------

Query:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
                                                               DLA AFVQVLGN+KASQQVFNISGEKYV+FDGLAKACAKAGGFPE
Subjt:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE

Query:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
        PEIVHYNPKEFDFGKKKPFPFRDQHFFAS+EKAKSVLGWKPEFDLVEGL DSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Subjt:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA

A0A1S3B4I6 chloroplast stem-loop binding protein of 41 kDa b, chloroplastic

4.6e-136

69.97

Show/hide

Query:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------
        MGIMANPMAAHHQK  SFSVLPSSLSDF+GARLHAQVQYKRKVMQPKG LHVTASAKKNIL+MGGTRFIGIFLSRLLVKEGHQ                 
Subjt:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------

Query:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------
                         GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE                   
Subjt:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------

Query:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
                                                               DLATAFVQVLGN+KASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Subjt:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE

Query:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
        PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGL DSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Subjt:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA

A0A5D3C0Z4 Chloroplast stem-loop binding protein of 41 kDa b

4.6e-136

69.97

Show/hide

Query:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------
        MGIMANPMAAHHQK  SFSVLPSSLSDF+GARLHAQVQYKRKVMQPKG LHVTASAKKNIL+MGGTRFIGIFLSRLLVKEGHQ                 
Subjt:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------

Query:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------
                         GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE                   
Subjt:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------

Query:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
                                                               DLATAFVQVLGN+KASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Subjt:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE

Query:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
        PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGL DSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Subjt:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA

A0A6J1HAG5 chloroplast stem-loop binding protein of 41 kDa b, chloroplastic

5.3e-140

71.8

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Query:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------
        MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ                 
Subjt:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------

Query:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------
                         GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE                   
Subjt:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------

Query:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
                                                               DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Subjt:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE

Query:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
        PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Subjt:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA

A0A6J1HY30 chloroplast stem-loop binding protein of 41 kDa b, chloroplastic

1.4e-137

71.02

Show/hide

Query:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------
        MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTA AKKNILVMGGTRFIGIFLSRLLVKEGHQ                 
Subjt:  MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------

Query:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------
                         GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE                   
Subjt:  -----------------GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------

Query:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
                                                               DLATAFVQVLGN KASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Subjt:  -------------------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE

Query:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
        PEIVHYNPKEFDFGKKK FPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Subjt:  PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA

SwissProt top hits

e value

%identity

Alignment

Q9LYA9 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

6.2e-21

26.45

Show/hide

Query:  SPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTA-SAKKNILVM----GGTRFIGIFLSRLLVKEGHQ------GD-------RKDFDFVKSSL
        S SFS L SS S    + L   ++  R++   K  +  ++   KKN+L++    GG   IG + ++ L+  GH       GD       +  F+     +
Subjt:  SPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTA-SAKKNILVM----GGTRFIGIFLSRLLVKEGHQ------GD-------RKDFDFVKSSL

Query:  SAAG------------------FDVVYDINGREAVEVEPILDALPK--LEQFIYCSSAGVYLKSDLLPHFE-----------------------------
        S  G                  FDVV D NG++   V P++D      ++QF++ SSAG+Y  ++  PH E                             
Subjt:  SAAG------------------FDVVYDINGREAVEVEPILDALPK--LEQFIYCSSAGVYLKSDLLPHFE-----------------------------

Query:  ------------------------------------------DLATAFVQVLGN-EKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD
                                                  DL++     + N E AS  +FN   ++ VT DG+AK CA A G    EIVHY+PK   
Subjt:  ------------------------------------------DLATAFVQVLGN-EKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD

Query:  FGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIIL
           KK F FR+ HF+A    AK +LGW+ + +L E L + +      G  +KE  F  DD IL
Subjt:  FGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIIL

Q9SA52 Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic

1.2e-117

61.62

Show/hide

Query:  QKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------------------
        Q  PSFS+L SSLSDF+GA+LH QVQYKRKV QPKGAL+V+AS++K IL+MGGTRFIG+FLSR+LVKEGHQ                             
Subjt:  QKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------------------

Query:  -----GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------------------
             GDRKD+DFVKSSLSA GFDVVYDINGREA EVEPIL+ALPKLEQ+IYCSSAGVYLKSD+LPH E                               
Subjt:  -----GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------------------

Query:  -------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD
                                                   DLATAF+ VLGNEKAS+++FNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD
Subjt:  -------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD

Query:  FGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQ
        FGKKK FPFRDQHFFASVEKAK VLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADF+TDD+IL K LVLQ
Subjt:  FGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G09340.1 chloroplast RNA binding

8.6e-119

61.62

Show/hide

Query:  QKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------------------
        Q  PSFS+L SSLSDF+GA+LH QVQYKRKV QPKGAL+V+AS++K IL+MGGTRFIG+FLSR+LVKEGHQ                             
Subjt:  QKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQ-----------------------------

Query:  -----GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------------------
             GDRKD+DFVKSSLSA GFDVVYDINGREA EVEPIL+ALPKLEQ+IYCSSAGVYLKSD+LPH E                               
Subjt:  -----GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-------------------------------

Query:  -------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD
                                                   DLATAF+ VLGNEKAS+++FNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD
Subjt:  -------------------------------------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD

Query:  FGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQ
        FGKKK FPFRDQHFFASVEKAK VLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADF+TDD+IL K LVLQ
Subjt:  FGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQ

AT3G63140.1 chloroplast stem-loop binding protein of 41 kDa

4.4e-22

26.45

Show/hide

Query:  SPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTA-SAKKNILVM----GGTRFIGIFLSRLLVKEGHQ------GD-------RKDFDFVKSSL
        S SFS L SS S    + L   ++  R++   K  +  ++   KKN+L++    GG   IG + ++ L+  GH       GD       +  F+     +
Subjt:  SPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTA-SAKKNILVM----GGTRFIGIFLSRLLVKEGHQ------GD-------RKDFDFVKSSL

Query:  SAAG------------------FDVVYDINGREAVEVEPILDALPK--LEQFIYCSSAGVYLKSDLLPHFE-----------------------------
        S  G                  FDVV D NG++   V P++D      ++QF++ SSAG+Y  ++  PH E                             
Subjt:  SAAG------------------FDVVYDINGREAVEVEPILDALPK--LEQFIYCSSAGVYLKSDLLPHFE-----------------------------

Query:  ------------------------------------------DLATAFVQVLGN-EKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD
                                                  DL++     + N E AS  +FN   ++ VT DG+AK CA A G    EIVHY+PK   
Subjt:  ------------------------------------------DLATAFVQVLGN-EKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD

Query:  FGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIIL
           KK F FR+ HF+A    AK +LGW+ + +L E L + +      G  +KE  F  DD IL
Subjt:  FGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIIL

Sequences

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CDS sequence

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ATGGGTATCATGGCAAACCCAATGGCTGCTCACCACCAAAAATCGCCTTCATTCTCTGTTCTTCCTTCTTCACTTTCCGACTTCCATGGCGCCAGACTCCACGCCCAAGT
TCAGTATAAGAGGAAGGTTATGCAGCCAAAAGGGGCATTACATGTTACAGCAAGCGCCAAGAAGAACATCCTTGTAATGGGTGGCACCAGATTCATTGGTATATTCTTGT
CTAGACTTCTTGTCAAAGAGGGCCATCAGGGAGACAGAAAAGACTTCGATTTCGTGAAATCGAGCCTCTCGGCTGCAGGGTTCGATGTCGTTTACGACATAAATGGGCGA
GAAGCAGTTGAAGTTGAACCAATTTTAGATGCATTGCCTAAGCTAGAGCAGTTTATATACTGTTCTTCAGCTGGTGTTTACCTCAAATCTGATCTCCTACCTCACTTTGA
GGATTTGGCAACAGCTTTTGTTCAAGTTCTTGGTAATGAAAAGGCAAGCCAGCAAGTATTCAATATCTCTGGTGAAAAATATGTGACATTTGATGGGTTAGCCAAAGCTT
GTGCAAAGGCTGGAGGCTTTCCCGAGCCCGAGATCGTCCACTATAACCCGAAGGAGTTCGACTTCGGAAAAAAGAAGCCATTCCCTTTCCGTGATCAGCATTTCTTTGCG
TCGGTTGAGAAAGCGAAGAGCGTGCTCGGGTGGAAGCCCGAGTTCGATTTGGTTGAAGGACTTACCGACTCCTACAACTTGGACTTTGGCCGAGGTACTTTCAGGAAAGA
GGCCGATTTCTCAACGGATGACATAATCCTTGGCAAGAGCCTGGTTCTTCAAGCTTGA

mRNA sequence

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AAGCCATGCCTTCACAAGAACATCCCTTCAAATCCATTACCCTTTTAATCCCACCACCAAACAGCAAGAACACAGGGTTTCCAAATGGGTATCATGGCAAACCCAATGGC
TGCTCACCACCAAAAATCGCCTTCATTCTCTGTTCTTCCTTCTTCACTTTCCGACTTCCATGGCGCCAGACTCCACGCCCAAGTTCAGTATAAGAGGAAGGTTATGCAGC
CAAAAGGGGCATTACATGTTACAGCAAGCGCCAAGAAGAACATCCTTGTAATGGGTGGCACCAGATTCATTGGTATATTCTTGTCTAGACTTCTTGTCAAAGAGGGCCAT
CAGGGAGACAGAAAAGACTTCGATTTCGTGAAATCGAGCCTCTCGGCTGCAGGGTTCGATGTCGTTTACGACATAAATGGGCGAGAAGCAGTTGAAGTTGAACCAATTTT
AGATGCATTGCCTAAGCTAGAGCAGTTTATATACTGTTCTTCAGCTGGTGTTTACCTCAAATCTGATCTCCTACCTCACTTTGAGGATTTGGCAACAGCTTTTGTTCAAG
TTCTTGGTAATGAAAAGGCAAGCCAGCAAGTATTCAATATCTCTGGTGAAAAATATGTGACATTTGATGGGTTAGCCAAAGCTTGTGCAAAGGCTGGAGGCTTTCCCGAG
CCCGAGATCGTCCACTATAACCCGAAGGAGTTCGACTTCGGAAAAAAGAAGCCATTCCCTTTCCGTGATCAGCATTTCTTTGCGTCGGTTGAGAAAGCGAAGAGCGTGCT
CGGGTGGAAGCCCGAGTTCGATTTGGTTGAAGGACTTACCGACTCCTACAACTTGGACTTTGGCCGAGGTACTTTCAGGAAAGAGGCCGATTTCTCAACGGATGACATAA
TCCTTGGCAAGAGCCTGGTTCTTCAAGCTTGA

Protein sequence

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MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQGDRKDFDFVKSSLSAAGFDVVYDINGR
EAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFA
SVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA

Carg27418 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome