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Carg27425 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27425
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionkeratin, type II cytoskeletal 3 isoform X2
Genome locationCarg_Chr09:9412975..9415777
RNA-Seq ExpressionCarg27425
SyntenyCarg27425
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025112.1 hypothetical protein SDJN02_13935 [Cucurbita argyrosperma subsp. argyrosperma]8.9e-56100Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFPQ
        GDLLNGRQSIFPQ
Subjt:  GDLLNGRQSIFPQ
XP_022932819.1 keratin, type II cytoskeletal 2 epidermal isoform X1 [Cucurbita moschata]3.4e-55100Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFP
        GDLLNGRQSIFP
Subjt:  GDLLNGRQSIFP
XP_022932820.1 keratin, type II cytoskeletal 2 epidermal isoform X2 [Cucurbita moschata]8.9e-56100Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFPQ
        GDLLNGRQSIFPQ
Subjt:  GDLLNGRQSIFPQ
XP_022974026.1 keratin, type II cytoskeletal 3 isoform X2 [Cucurbita maxima]7.6e-5599.12Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSR EGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFPQ
        GDLLNGRQSIFPQ
Subjt:  GDLLNGRQSIFPQ
XP_023521209.1 fibroin heavy chain isoform X2 [Cucurbita pepo subsp. pepo]2.9e-5498.23Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSRHEG EDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFPQ
        GDLLNG QSIFPQ
Subjt:  GDLLNGRQSIFPQ
TrEMBL top hitse value%identityAlignment
A0A0A0KSM8 Uncharacterized protein3.9e-4989.29Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNG+R++ GEDE G+LW LPVLKSSR G LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFP
        GD+L GRQSIFP
Subjt:  GDLLNGRQSIFP
A0A6J1EY31 keratin, type II cytoskeletal 2 epidermal isoform X11.6e-55100Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFP
        GDLLNGRQSIFP
Subjt:  GDLLNGRQSIFP
A0A6J1F360 keratin, type II cytoskeletal 2 epidermal isoform X24.3e-56100Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFPQ
        GDLLNGRQSIFPQ
Subjt:  GDLLNGRQSIFPQ
A0A6J1IA95 keratin, type II cytoskeletal 3 isoform X23.7e-5599.12Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSR EGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFPQ
        GDLLNGRQSIFPQ
Subjt:  GDLLNGRQSIFPQ
A0A6J1ICW2 keratin, type II cytoskeletal 3 isoform X11.4e-5499.11Show/hide
Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSR EGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFP
        GDLLNGRQSIFP
Subjt:  GDLLNGRQSIFP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G66820.1 glycine-rich protein2.1e-0750Show/hide
Query:  LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQ-----LGFGLGAGCGVGLGFGYGAGRGIAQDD-KRRY
        +GP  G G+GCG G GIGL GG G G    GL      LGFG+G G G G G+G+G G G + DD K R+
Subjt:  LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQ-----LGFGLGAGCGVGLGFGYGAGRGIAQDD-KRRY
AT4G10330.1 glycine-rich protein8.1e-3164.89Show/hide
Query:  SRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVG
        +R   G+D+ G+LWKLP ++   IG++GPAFGLGVGCG GFG GL+GG GFGPG+PGLQ G G GAGCG+G+GFGYG GRG A D  R Y NVG
Subjt:  SRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGAAACATGAACGGAAGCAGACACGAAGGCGGAGAAGATGAGAGCGGAATGCTGTGGAAGCTTCCAGTTTTGAAATCTTCCAGAATCGGAAGGTTAGGTCCCGC
CTTCGGCCTCGGCGTTGGTTGTGGCGTCGGCTTTGGCATCGGCCTCGTCGGAGGTGCTGGATTTGGTCCAGGAATTCCTGGCCTACAACTTGGCTTTGGTCTTGGTGCTG
GATGTGGAGTTGGCTTAGGATTTGGCTATGGTGCGGGCAGGGGCATTGCGCAAGATGACAAACGGAGATACTCTAACGTTGGGGATCTGTTAAATGGTCGTCAAAGTATT
TTTCCTCAGTAA
mRNA sequenceShow/hide mRNA sequence
AAGAAAAATTAAAATTTATACCTAAAACCATATTTGACAAATTTGGCGAAGGAATGTATGGTTAAAAAAACGTTGCAAGGAGGAATTTATTCTCTCTACTGACGTTGATG
AAAGACGTGGAATGAAAAATAATCAGAAATGCCTCGAAACATGAACGGAAGCAGACACGAAGGCGGAGAAGATGAGAGCGGAATGCTGTGGAAGCTTCCAGTTTTGAAAT
CTTCCAGAATCGGAAGGTTAGGTCCCGCCTTCGGCCTCGGCGTTGGTTGTGGCGTCGGCTTTGGCATCGGCCTCGTCGGAGGTGCTGGATTTGGTCCAGGAATTCCTGGC
CTACAACTTGGCTTTGGTCTTGGTGCTGGATGTGGAGTTGGCTTAGGATTTGGCTATGGTGCGGGCAGGGGCATTGCGCAAGATGACAAACGGAGATACTCTAACGTTGG
GGATCTGTTAAATGGTCGTCAAAGTATTTTTCCTCAGTAAGTTCTAAACTAACTGTTTTCAACTTCTGACTATCCTGTTCTGTTCCTGCATGCATTATTACAAGTCAGGG
ATAATTCCCATTTTAGTGCTTATCTAGATTTGGTGACCTGCTTTTTCCTAACCATGTATTGACTAAGGTGGCAATTTTCCACGATGTAAATTCCAAAAAAATAACCCCAG
TGACTCTCTTTCTCTCTCTACTTGCCTCCACACCTCCACCTCACCTTCATTGGAA
Protein sequenceShow/hide protein sequence
MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSI
FPQ