CuGenDBv2

Gene ID	Carg27433
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	binding partner of ACD11 1-like
Genome location	Carg_Chr04:450969..453691
RNA-Seq Expression	Carg27433
Synteny	Carg27433
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6599926.1 Binding partner of ACD11 1, partial [Cucurbita argyrosperma subsp. sororia]

3.1e-142

99.64

Show/hide

Query:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA
        M MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA
Subjt:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA

Query:  PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS
        PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS

Query:  NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

XP_022941586.1 binding partner of ACD11 1-like isoform X1 [Cucurbita moschata]

1.2e-141

100

Show/hide

Query:  MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPN
        MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPN
Subjt:  MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPN

Query:  QAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNY
        QAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNY
Subjt:  QAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNY

Query:  YVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        YVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
Subjt:  YVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

XP_022941588.1 binding partner of ACD11 1-like isoform X3 [Cucurbita moschata]

1.1e-142

100

Show/hide

Query:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA
        MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA
Subjt:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA

Query:  PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS
        PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS

Query:  NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

XP_022996230.1 binding partner of ACD11 1-like isoform X2 [Cucurbita maxima]

5.3e-142

99.64

Show/hide

Query:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA
        MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA
Subjt:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA

Query:  PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS
        PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGI EKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS

Query:  NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

XP_023520082.1 binding partner of ACD11 1-like isoform X2 [Cucurbita pepo subsp. pepo]

1.5e-141

98.92

Show/hide

Query:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA
        MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTI LVENYHLPP+AMSSILDKRQTVTGNA
Subjt:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA

Query:  PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS
        PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALM+
Subjt:  PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS

Query:  NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FLI4 binding partner of ACD11 1-like isoform X1

5.7e-142

100

Show/hide

Query:  MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPN
        MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPN
Subjt:  MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPN

Query:  QAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNY
        QAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNY
Subjt:  QAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNY

Query:  YVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        YVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
Subjt:  YVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

A0A6J1FMX0 binding partner of ACD11 1-like isoform X2

7.7e-139

91.75

Show/hide

Query:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQ-------------------------RETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIAL
        MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQ                         RETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIAL
Subjt:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQ-------------------------RETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIAL

Query:  VENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQ
        VENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQ
Subjt:  VENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQ

Query:  VSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNS
        VSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNS
Subjt:  VSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNS

Query:  ADR
        ADR
Subjt:  ADR

A0A6J1FSI4 binding partner of ACD11 1-like isoform X3

5.1e-143

100

Show/hide

Query:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA
        MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA
Subjt:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA

Query:  PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS
        PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS

Query:  NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

A0A6J1K1B6 binding partner of ACD11 1-like isoform X1

2.9e-138

91.72

Show/hide

Query:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQ------------------------RETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALV
        MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQ                        RETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALV
Subjt:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQ------------------------RETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALV

Query:  ENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQV
        ENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGI EKITAGTAVVNEKVREMDEKFQV
Subjt:  ENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQV

Query:  SEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSA
        SEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSA
Subjt:  SEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSA

Query:  DR
        DR
Subjt:  DR

A0A6J1K671 binding partner of ACD11 1-like isoform X2

2.6e-142

99.64

Show/hide

Query:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA
        MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA
Subjt:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA

Query:  PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS
        PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGI EKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMS

Query:  NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

SwissProt top hits

e value

%identity

Alignment

P87216 Protein vip1

2.0e-06

26.57

Show/hide

Query:  VKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAE
        V V+NIS   +E+ I +FFSF G++  +  ++  E TQ A + ++      TA+LL  A +G   + I   +         +S  D+       A  Q +
Subjt:  VKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAE

Query:  D----VVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVN------EKVREMDEKFQVSEK---TKSALAVAEQKA-
             ++S +L++G+ L    + K+   D+ + ++S          +  GI E   +G   VN      EK  E+D KF +S+K   T S ++    KA 
Subjt:  D----VVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVN------EKVREMDEKFQVSEK---TKSALAVAEQKA-

Query:  -SSAGTA
         ++AGT+
Subjt:  -SSAGTA

Q9LFD5 Binding partner of ACD11 1

1.2e-56

49.23

Show/hide

Query:  MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPN
        +R+VKV N+S   +E DI+EFFSFSGE+  +++Q    N   AYVT+K++QGA+TA+LL+GA I D SV I L  NY  PP A  +  + + +   +   
Subjt:  MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPN

Query:  QAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNY
        +AEDVVS+MLAKGFILGKDAV KAKAFDE+H  TS A+A V S+D+K+G+++K+TAGT++VNEK++ +D+ FQV+E+TKS  A AEQ  SSAG+A+M N 
Subjt:  QAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNY

Query:  YVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDE
        YV TG +W + A   V +AA EV Q TK   EK E E+     + +  +   ++ +H  E
Subjt:  YVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67950.1 RNA-binding (RRM/RBD/RNP motifs) family protein

3.7e-69

54.98

Show/hide

Query:  MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPN
        ++TVK+SN+S   S++D++EFFSFSG+I YVEM+ ET+ +QVAYVT+KDSQGA+TA+LLTGA I DL V+I    NY LPPEA++  LD   +  G +  
Subjt:  MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPN

Query:  QAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNY
        +AEDVV+ M+ +G+ LGKDA+ KAKAFD+RH L SNASAT+ S+D KMG++EK++ GT VVNEK+R++DE++QV E TKSALA AE+ A SA TALM+N 
Subjt:  QAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNY

Query:  YVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV
        YV +GA+WFSNA  AVTKA +E       KVE   E +KE I               LD   P  PA+VPV
Subjt:  YVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV

AT1G67950.2 RNA-binding (RRM/RBD/RNP motifs) family protein

3.7e-69

54.98

Show/hide

Query:  MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPN
        ++TVK+SN+S   S++D++EFFSFSG+I YVEM+ ET+ +QVAYVT+KDSQGA+TA+LLTGA I DL V+I    NY LPPEA++  LD   +  G +  
Subjt:  MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPN

Query:  QAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNY
        +AEDVV+ M+ +G+ LGKDA+ KAKAFD+RH L SNASAT+ S+D KMG++EK++ GT VVNEK+R++DE++QV E TKSALA AE+ A SA TALM+N 
Subjt:  QAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNY

Query:  YVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV
        YV +GA+WFSNA  AVTKA +E       KVE   E +KE I               LD   P  PA+VPV
Subjt:  YVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV

AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein

4.1e-68

54.78

Show/hide

Query:  MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQ-TVTGNAP
        ++TVK+SN+S   S++D++EFFSFSG+I YVEM+ ET+ +QVAYVT+KDSQGA+TA+LLTGA I DL V+I    NY LPPEA++  LD ++ +  G + 
Subjt:  MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQ-TVTGNAP

Query:  NQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSN
         +AEDVV+ M+ +G+ LGKDA+ KAKAFD+RH L SNASAT+ S+D KMG++EK++ GT VVNEK+R++DE++QV E TKSALA AE+ A SA TALM+N
Subjt:  NQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSN

Query:  YYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV
         YV +GA+WFSNA  AVTKA +E       KVE   E +KE I               LD   P  PA+VPV
Subjt:  YYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV

AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein

1.6e-72

56.77

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Query:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA
        M+M TVKVSN+S   ++RD++EFFSFSG+ILY+E Q ETE T++AYVT+KD QGA+TA+LL+GA I D SV +++  +Y L PEA++S+  K    +  A
Subjt:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA

Query:  PN----QAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGT
         +    +AEDVVS+MLAKGFILGKDA+ KAK+ DE+HQLTS ASA V S D+K+G T+KI  GT VV EKVRE+D+K+QVSEKTKSA+A AEQ  S+AG+
Subjt:  PN----QAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGT

Query:  ALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDE
        A+M N YV TGA W + A   V KAAEEV Q  K KV  AEEE K         +++ FA +HL E
Subjt:  ALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDE

AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein

4.0e-71

54.07

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Query:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA
        MSM TVKVSN+S   +ERD++EFFSFSG+I Y+E Q E + +++AYVT+KD QGA+TA+LLTG+ I D SVT+ +  +Y LPP+A++SI   +++   ++
Subjt:  MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNA

Query:  P--------NQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKAS
        P         +AEDVVS M++KGF+LGKDA+ KAK+ DE+HQLTS ASA VTS D+++G TEKI  GT VV+EKV+E+D+KFQV+EKTKSA+A AEQ  S
Subjt:  P--------NQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKAS

Query:  SAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDE
        +AG+A+M N YV TGA W + A   V+KAAEEV Q  K KV  AEEE++     E+  +++  A +HL E
Subjt:  SAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDE

Sequences

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CDS sequence

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ATGTCGATGAGAACTGTGAAGGTCAGCAATATCTCGAAGGCTACTTCGGAGAGAGATATCGAAGAATTCTTTTCATTCTCTGGTGAAATCCTTTATGTTGAAATGCAAAG
AGAAACTGAAAATACTCAGGTTGCTTATGTTACATACAAGGATTCTCAAGGAGCAGATACTGCAATTCTTTTGACAGGAGCAAAAATTGGTGATCTATCTGTAACAATTG
CTCTGGTTGAGAATTATCATCTTCCACCAGAAGCAATGTCATCAATCCTGGATAAAAGGCAAACTGTTACTGGGAATGCTCCGAATCAGGCAGAAGACGTCGTAAGTACA
ATGCTTGCTAAGGGCTTCATCTTGGGGAAGGATGCTGTCAACAAGGCAAAAGCGTTCGATGAACGGCACCAATTGACATCGAATGCTTCTGCGACTGTCACGTCCATAGA
TCGCAAGATGGGCATAACAGAGAAGATAACTGCAGGCACAGCAGTAGTAAATGAAAAGGTCAGGGAGATGGATGAAAAGTTCCAGGTTTCTGAAAAGACGAAATCCGCTC
TCGCAGTGGCCGAGCAGAAGGCAAGCAGTGCAGGAACTGCGCTCATGAGTAACTATTATGTGTTTACTGGAGCAGCATGGTTTTCAAATGCAGTAACTGCTGTTACAAAG
GCTGCTGAGGAAGTGACTCAGATGACCAAGGCAAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAGAGTATATACCGCGAAAGAACTGGGATCATCAACAACTTCGCCGA
GCTCCATCTCGACGAGCCATTACCAGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCTGATAGATAA

mRNA sequence

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TGAAATTGTGTCGCTCCTACTGAAAAAACAAAAATGAAAAAACTTCGCAAACAAATCGTATCCGTTTCCAGAACCAAACTACCCAAAAAAAACTAAATCCAAAACCAAAA
ATCACTTCCCCTTCCTCACAACAATTTATTATCTTCTCTTCGCGCCTTCATCTCATCATCTTCCGCCATACCTAATTCCCTCTCCAACCTTTCTTTTGCCGCGCACAAAT
GTCGATGAGAACTGTGAAGGTCAGCAATATCTCGAAGGCTACTTCGGAGAGAGATATCGAAGAATTCTTTTCATTCTCTGGTGAAATCCTTTATGTTGAAATGCAAAGAG
AAACTGAAAATACTCAGGTTGCTTATGTTACATACAAGGATTCTCAAGGAGCAGATACTGCAATTCTTTTGACAGGAGCAAAAATTGGTGATCTATCTGTAACAATTGCT
CTGGTTGAGAATTATCATCTTCCACCAGAAGCAATGTCATCAATCCTGGATAAAAGGCAAACTGTTACTGGGAATGCTCCGAATCAGGCAGAAGACGTCGTAAGTACAAT
GCTTGCTAAGGGCTTCATCTTGGGGAAGGATGCTGTCAACAAGGCAAAAGCGTTCGATGAACGGCACCAATTGACATCGAATGCTTCTGCGACTGTCACGTCCATAGATC
GCAAGATGGGCATAACAGAGAAGATAACTGCAGGCACAGCAGTAGTAAATGAAAAGGTCAGGGAGATGGATGAAAAGTTCCAGGTTTCTGAAAAGACGAAATCCGCTCTC
GCAGTGGCCGAGCAGAAGGCAAGCAGTGCAGGAACTGCGCTCATGAGTAACTATTATGTGTTTACTGGAGCAGCATGGTTTTCAAATGCAGTAACTGCTGTTACAAAGGC
TGCTGAGGAAGTGACTCAGATGACCAAGGCAAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAGAGTATATACCGCGAAAGAACTGGGATCATCAACAACTTCGCCGAGC
TCCATCTCGACGAGCCATTACCAGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCTGATAGATAAACAGTAAGTTGTGCATCATATTCATGAAAGCAGAAATCCTACACT
TGTGAATTACTTTGCTTACCCATTTTGCTGTATGATATACATTTCATCTAGATGTTGAAATGTTGCGACATTTTTTTGAGTACAAAAAAATTACTTTTTGGATGCTTGAT
TGTATACCGTTTCACTTAACTAATGTAATTTGTAATTTACAAATATAGATTATTGTCTCGTTTTCTTTTA

Protein sequence

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MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVST
MLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTK
AAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

Carg27433 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome