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Carg27474 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg27474
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAminoacyl-tRNA hydrolase
Genome locationCarg_Chr20:4815086..4815470
RNA-Seq ExpressionCarg27474
SyntenyCarg27474
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0004045 - aminoacyl-tRNA hydrolase activity (molecular function)
InterPro domainsIPR002833 - Peptidyl-tRNA hydrolase, PTH2
IPR023476 - Peptidyl-tRNA hydrolase II domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010994.1 hypothetical protein SDJN02_27792, partial [Cucurbita argyrosperma subsp. argyrosperma]8.3e-41100Show/hide
Query:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGKKLLLNA
        MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGKKLLLNA
Subjt:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGKKLLLNA

KAG7010995.1 Peptidyl-tRNA hydrolase 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]8.6e-38100Show/hide
Query:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK
        MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK
Subjt:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK

XP_022944765.1 peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2 [Cucurbita moschata]2.5e-3798.8Show/hide
Query:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK
        MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLK+GKGK
Subjt:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK

XP_022986617.1 peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2 [Cucurbita maxima]6.2e-3698.8Show/hide
Query:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK
        MDLTWLS IVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK
Subjt:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK

XP_023511828.1 peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo]1.9e-3798.8Show/hide
Query:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK
        MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKA+LAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK
Subjt:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK

TrEMBL top hitse value%identityAlignment
A0A6J1D5N0 Aminoacyl-tRNA hydrolase1.2e-3289.16Show/hide
Query:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK
        MDLTWLSAIVVGA CLVLGY IGSKYPPRIF KAKLAK N+SSR+GKKDKPKE LE+E+LADILDDFKMVLVVRNDLKMGKGK
Subjt:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK

A0A6J1FZ04 Aminoacyl-tRNA hydrolase1.2e-3798.8Show/hide
Query:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK
        MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLK+GKGK
Subjt:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK

A0A6J1G686 Aminoacyl-tRNA hydrolase1.3e-3492.77Show/hide
Query:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK
        MDLTWLSAIVVGA CLVLGYCIGSKYPPRIFIKAKLAK N+SSR GKK KPKEPLEVENLADIL+DFKMVLVVRNDLKMGKGK
Subjt:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK

A0A6J1J827 Aminoacyl-tRNA hydrolase3.0e-3698.8Show/hide
Query:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK
        MDLTWLS IVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK
Subjt:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK

A0A6J1L379 Aminoacyl-tRNA hydrolase1.1e-3390.36Show/hide
Query:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK
        MDLTWLSAIVVGA CLVLGYCI SKYPPRIFIKAKLAK N+SSR+GKK KPKEPLE+ENLADIL+DFKMVLVVRNDLKMGKGK
Subjt:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G03010.1 Peptidyl-tRNA hydrolase II (PTH2) family protein3.4e-1656.47Show/hide
Query:  MDLTW-LSAIVVGASCLVLGYCIGS-KYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK
        MDL W LS ++VGA+   LGY I + +   RIF+ +K   I+  S   KK K KEPLE+E LAD   +FKMVLVVRNDLKMGKGK
Subjt:  MDLTW-LSAIVVGASCLVLGYCIGS-KYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK

AT3G03010.2 Peptidyl-tRNA hydrolase II (PTH2) family protein3.4e-1656.47Show/hide
Query:  MDLTW-LSAIVVGASCLVLGYCIGS-KYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK
        MDL W LS ++VGA+   LGY I + +   RIF+ +K   I+  S   KK K KEPLE+E LAD   +FKMVLVVRNDLKMGKGK
Subjt:  MDLTW-LSAIVVGASCLVLGYCIGS-KYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK

AT5G16870.1 Peptidyl-tRNA hydrolase II (PTH2) family protein1.8e-1759.04Show/hide
Query:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK
        MDLTWLSA++VGA+   LGYCIG++       K  +A ++   ++ K    K PLE+E LADILDDFKMVLVVRNDLKMGKGK
Subjt:  MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTGACATGGCTGAGTGCCATTGTAGTTGGGGCAAGCTGCCTTGTTTTGGGATACTGTATTGGTTCGAAGTATCCTCCTCGCATCTTTATCAAAGCTAAATTAGC
CAAAATCAACCAATCCAGCAGAAATGGGAAGAAGGATAAGCCTAAAGAGCCATTGGAGGTCGAAAATTTGGCTGACATACTCGATGACTTCAAGATGGTTTTAGTTGTGA
GAAATGATTTGAAAATGGGAAAAGGAAAAAAATTGCTGCTCAATGCA
mRNA sequenceShow/hide mRNA sequence
ATGGATCTGACATGGCTGAGTGCCATTGTAGTTGGGGCAAGCTGCCTTGTTTTGGGATACTGTATTGGTTCGAAGTATCCTCCTCGCATCTTTATCAAAGCTAAATTAGC
CAAAATCAACCAATCCAGCAGAAATGGGAAGAAGGATAAGCCTAAAGAGCCATTGGAGGTCGAAAATTTGGCTGACATACTCGATGACTTCAAGATGGTTTTAGTTGTGA
GAAATGATTTGAAAATGGGAAAAGGAAAAAAATTGCTGCTCAATGCA
Protein sequenceShow/hide protein sequence
MDLTWLSAIVVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGKKLLLNA